Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0246400.1

Overview

Field Value
Gene ID LotjaGi1g1v0246400
Transcript ID LotjaGi1g1v0246400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|G8A389|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:59183875..59188482) extracted from Lotus japonicus Gifu genome v1.2.

TGGGCTTGCCCGTATTGACGGCTCTAGTTTGAAGGCTGAAAAGACGGGCCTGGTGGGCCGAGATGTGGTTATGCGAAGAA CACGATGATAGCTAGATTGATATGTCGTAGCCTCAGAAACAGAGAGGAAAACCAGAGAGGAAAATGGCTTCTCTGCGTGT TGTGTTTCGTCACATACACATAAACATGAACCACTGCTACTCCACTTCACCACGACCCATGGGTGGTTTACTCCTCCACC GTCGCGACACGTGGCGGCGGCGCTGCAACAGTGTTAAACCCCGTGCATGTTCAGACAATCATCACCGCAGTTACAGAGTA GTGCTGAACAAAGATGAACGGTTAGGAGAGCGTGTTGGTCACAACAACACTACCGAGCTCGGAAACTCGACGACGACCAT TGCGGCCATCGTAACATCCTTGGGGGGCCCACCCGCCGCCGTCGGAATAGTTCGCCTCTCGGGTCCTCACGCGGTGTCCA TAGCGGGTCGAGTGTTCAGACCCGGCCGGAGCACGTGGCGGCCCACCAGCCATGTGGTGGAGTACGGCGTGGTCTTCGAC TCCGACGGGAACGTCATCGACGAGGTTAGTACCCGAAACGACGGCGTCGTTTCACTGTTTGTGATAATGTTGTGGTGGAA ATTTCAAAATTGGGGTTTTCTCTTGTTGTTGTTGATAGGTTTTGGCGGTGCCGATGCTAGCACCGAGGTCGTACACTCGG GAGGACGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTCCGTCGCGTGCTCAGAACTTGTTTGGAAGCTGGAGC AACACTAGCTCAACCAGGTCTGTGCTGTGTCTAAACCTAATTTTTTTGCTCCCTCGAGACGAAGTTTTGATTAAGCTTAT AATAACAACTTATTGTTCGATTTTTTTTGTTTTTGGTTCATTAAATCTTGTCAAATAAGCTTGTTGGATAATGGCGAGTT GTTAGAAGTCCCACATTGGCTAGAGATATGATATAGATAATCTTTATAAAGGGTCGAGCAACCCTCAACTCTAGAGCTAG CTTATGAGTTGAGTTAGGCGTTTGGAATTCTAATACAAGTGTTTCATTGAAAGCTTTTATCTTAGTAGATTACGCATTAA ATGTTCACAACAAATGTAGTATTTGTACGAATTGATGGATATTTATGTAGAATGAAGTGCATTCGGTTGGTGATTCTTGT ATTCTCATTTCAGGTGAGTTTACTCTGCGTGCTTTTCTTAATGGGCGGTTGGATCTATCCCAAGCTGAAAATGTTGCGAA ACTTATCGCAGCCAAATCCGTGGCTGCTGCAGATGCTGCGCTGGCGGGAATCCAGGCATGTCTAGCTCGACTCTGTTTTT CGTTCTGTGTTGCAGCATCATGTGCTTGTGCTTAGTTCATTGGTTGCATATGTGGGGGGTTAAATGTTTTGTTACTTTTG AGTTTTGACAGCTGGATAAGTGATACTGAAAAACCGTTATCTTTTGGGACAGGGTGGTTTCTCTTCTCTTGTCAGATCGT TGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGACGATGAGATGCCGCCTCTAAATTTG AATCAGATTATGGAAAAAATACATAATATGTCCCGAGATGTTGAGAATGCATTGGAAACAGCAAATTATGACAAGCTTCT GCAATCTGGATTACAGGTATGATCTGGAAGATGGCTTTCAACTTTGTAACAAGTGCTTATTTTTATGAAGTGTCATTGCA CTCCAATAGGTATAAAACTTAGCTGTTGTTATACGTGGGTCTATTTTTACGTGAATTTCGTGATTTCAATTGTTGGCTTT CCTAGTATTAATCTTATTGTAAAACTTTTGCAGATAGCAATTGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAA TGCTTGGAGCAAAGTATGTCAAAATATGTTACTTATTTAATAATTTCGAATGATATTTATTTAATTATTGAATGTTGTTT TGATATTAGCCATGGTATTAGCAAGTGAAACCATTTAATCTTCAATTATTTTGTACTTAATTGACTTCTGAAGTCCTTAA TTAAAGGAGTGGAATTGGAGGTGTGTTTTGGGACAGGGGAGTTCATAGTTTAGTATCATCTCAGCATGTTTAACTTTTTG ATTGTTTAACTTATTGAGCACGGTCTTGTAGCATGCAGAGTGAGAGGGCAATAGTCACCGAAATTGCTGGAACCACTCGT GATGTGATTGAAGCAAGTATTAGCGTTAATGGGATTCCTATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGA CATTGTTGAAAAGATTGGTGAGGCTTTCTTTTTCCTTCTTTAAGATCAAGATGAGGATAATTTTTTTATTGCACGATCTT TCACTTATCTGTACTGTGTGCTATGGCTGTTCAGTGTTTTGTGTGATCTTACAATGTCTGCCATTGGAATAAAATAAATT CTTCATGATTTAGTCTTTCTATAATGTCTTCAACTTGTTTGAATGCTCGTTTATTAAAGTTAATGAATTAGCACCAACCG CAGAATAATTTTTTATAAACTTCTTAATAATTCTCACTTCTTTGTAAGGGAACACCCAGAAAATCAAGTAAAAGTCTGTT AGATACTGGGTTAGAGATTTTGTTTGATTTTACCCGGCAATATTTTAGATGCATTGTGTTGCATGGATGTCAATTTTTTT GCTACACTAACCATATTGCTCCACATGTACTGAGATTTATATTTCTACTCTCTTAATAGGTGTAGAACGATCTGAAGCAG TTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACAGCTGAAGACACCAAACTTCTTGAA AGGATTCAGTCTACTAAGGTTTTACCACACGATCCCCTTTCTCCCTATTCTCCTTCTCTTATTAATGAGATTTCATATTA TTTTGATATAGATAGAAATATATATCCTTTTTATTTGATGGAGAAAGATTTGACATTTGAGAGGAATTTTTAGATATTGC TATTGAGTAGGCAGAATAGAACTGGCTAGGTGACCCCAGTTATATCTTTCACTATTTCAGTATTTCTTAATATATATTAT CTGATGATAAATTGGCACGCAAACACCTGGCTGCCTTGTAAACTTTGCCATCCTATTGTTACTTCAACAAGAACAGAATT CTTTTCTTGCTAGGTGGGGTTAGCTACATGGATCAAACAAAGCCAAATCCTCAAATATTCCATTTAGATCCTACAGTTAC CCCCGTGAAAAAAGACATCATCAAGGAAAAGGCCCTAAAACATTATAAATATGATATTGCTCTGGATATCTTTCTTTTGA TATGAACCTAGTACCTGGTATTATTTGCAATCTTTATATAATCTTTCTATAACAGGAATCAACTGGATCTTCCACCCCCG CAATCCTTGTTGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGGTGTCATGGTCACAATTTT TTCAGTAAAAGTGTGTTTACATGTGCTGTAACTGGTCAAGGATTACAAGACTTAGAGAGCACAGTTTTAGAGATGGTGGG TCTGGATGTAGTTCCTGCTGGAGGTCGCCGATGGACTGTCAATCAGGTAATCTTTTATGTTGGCTTTCTATCTTTCTCAT GAAGTTTTAGCTCCAATGGGAAGGAATCAATAAGCTGCTTGAACTATGTATCGAAAGTAAAATTAAACTAGAGGTGAAAG TCAAGATTTATGCATTGTAAAAGTGAAAATGGGTGATGGAAAATAACAATATAGTGGGATGCTAAGTACGACTCCATTTG CACTTAAATCAAAAGTTATGATCTTTTACTGCATGTGGTTTTTTTAGGCACAATTTGTTTTAACTTTCAGCTTATGAGTG TTTTTTTCAATCTAGATAGTGTTTGTTCCTATCTAGATAGGTGCTTGTGGAAAAGTTTGCTGAGGAAGTATTTTAAAAGT GTATCTTAACTTGTATAAAAAATTGGTTCCTAACATTTTTTTCCCTTTTCTTATAAATGCTAGTTTAGAAGATTATCCAA ACTGACTCTTAGTTAATATAACAATGATTCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTTCAAGGTTA CAATCATCAATAAGGGAGGAACTACCTCTGGATTTTTGGACAATTGATTTGAAGGATGCTGCAATGTCCCTTGGACAGAT AAATGGAGAAGATATATCAGAAGAGGTGTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAAATAGATACAAGGT ATGTGCTTGGTGATATTAAGCATGATTTTCAGCATATTTTATCTTCATCCTTTCAATTGTATATGGGACGCTAGATTTCA TCTAGGTTAAGCACGCCTCATGAATTCATTCTTTAAACACCATGGTGTTCGATAGTGTGTTTAGTTTCGCAATTTGCATC GAGTTTATAGTATGTTTATTCAATGTCTGAGACTTAAGCTAAGACTTGTTGGTTTTCACTAGAAATAATTCTAGAATATT TCACCGTAGAACCAAACATGATCAATTTATTACCAAACATGATCGAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0246400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTCTGCGTGTTGTGTTTCGTCACATACACATAAACATGAACCACTGCTACTCCACTTCACCACGACCCATGGG TGGTTTACTCCTCCACCGTCGCGACACGTGGCGGCGGCGCTGCAACAGTGTTAAACCCCGTGCATGTTCAGACAATCATC ACCGCAGTTACAGAGTAGTGCTGAACAAAGATGAACGGTTAGGAGAGCGTGTTGGTCACAACAACACTACCGAGCTCGGA AACTCGACGACGACCATTGCGGCCATCGTAACATCCTTGGGGGGCCCACCCGCCGCCGTCGGAATAGTTCGCCTCTCGGG TCCTCACGCGGTGTCCATAGCGGGTCGAGTGTTCAGACCCGGCCGGAGCACGTGGCGGCCCACCAGCCATGTGGTGGAGT ACGGCGTGGTCTTCGACTCCGACGGGAACGTCATCGACGAGGTTTTGGCGGTGCCGATGCTAGCACCGAGGTCGTACACT CGGGAGGACGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTCCGTCGCGTGCTCAGAACTTGTTTGGAAGCTGG AGCAACACTAGCTCAACCAGGTGAGTTTACTCTGCGTGCTTTTCTTAATGGGCGGTTGGATCTATCCCAAGCTGAAAATG TTGCGAAACTTATCGCAGCCAAATCCGTGGCTGCTGCAGATGCTGCGCTGGCGGGAATCCAGGGTGGTTTCTCTTCTCTT GTCAGATCGTTGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGACGATGAGATGCCGCC TCTAAATTTGAATCAGATTATGGAAAAAATACATAATATGTCCCGAGATGTTGAGAATGCATTGGAAACAGCAAATTATG ACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAATGCTTGG AGCAAAAGTGAGAGGGCAATAGTCACCGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATTAGCGTTAATGG GATTCCTATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTTGAAAAGATTGGTGTAGAACGATCTG AAGCAGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACAGCTGAAGACACCAAACTT CTTGAAAGGATTCAGTCTACTAAGGAATCAACTGGATCTTCCACCCCCGCAATCCTTGTTGTCAACAAGATAGATTGTAA ACCTTGTGCTGAGACTGAATGGGACAAAGGGTGTCATGGTCACAATTTTTTCAGTAAAAGTGTGTTTACATGTGCTGTAA CTGGTCAAGGATTACAAGACTTAGAGAGCACAGTTTTAGAGATGGTGGGTCTGGATGTAGTTCCTGCTGGAGGTCGCCGA TGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTTCAAGGTTACAATCATCAATAAGGGA GGAACTACCTCTGGATTTTTGGACAATTGATTTGAAGGATGCTGCAATGTCCCTTGGACAGATAAATGGAGAAGATATAT CAGAAGAGGTGTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0246400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLRVVFRHIHINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRVVLNKDERLGERVGHNNTTELG NSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYT REDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVAKLIAAKSVAAADAALAGIQGGFSSL VRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAW SKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKL LERIQSTKESTGSSTPAILVVNKIDCKPCAETEWDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVLEMVGLDVVPAGGRR WTVNQRQCEQLVRTKEALSRLQSSIREELPLDFWTIDLKDAAMSLGQINGEDISEEVLSNIFGKFCIGK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42714
38 549 512 3.3E-279 –
PANTHER
PTHR42714:SF1
38 549 512 3.3E-279 –
Gene3D
G3DSA:3.30.1360.120
71 205 135 3.5E-42
IPR027266
Hamap
MF_00379
84 549 466 30.49
IPR004520
Pfam
PF10396
85 205 121 1.5E-35
IPR018948
TIGRFAM
TIGR00450
98 549 452 9.0E-118
IPR004520
SUPERFAMILY
SSF52540
158 465 308 9.03E-41
IPR027417
Gene3D
G3DSA:1.20.120.430
206 549 344 1.3E-99
IPR027368
Pfam
PF12631
208 546 339 1.8E-44
IPR025867
Coils
Coil
270 290 21 - –
CDD
cd04164
298 470 173 6.45671E-66
IPR031168
ProSiteProfiles
PS51709
300 470 171 64.153
IPR031168
Gene3D
G3DSA:3.40.50.300
301 477 177 1.3E-99 –
TIGRFAM
TIGR00231
301 428 128 2.0E-23
IPR005225
Pfam
PF01926
302 423 122 1.9E-24
IPR006073

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006400
Biological process TRNA modification The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0246400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…