Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0352669.1

Overview

Field Value
Gene ID Lj0g3v0352669
Transcript ID Lj0g3v0352669.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description tRNA modification GTPase mnmE [Medicago truncatula] gi|358349532|ref|XP_003638789.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.1360.120
78 206 129 2.60E-38
IPR027266
Hamap
MF_00379
84 546 463 29.434
IPR004520
Pfam
PF10396
85 205 121 1.60E-34
IPR018948
PANTHER
PTHR11649:SF56
87 546 460 1.70E-165 –
PANTHER
PTHR11649
87 546 460 1.70E-165 –
TIGRFAM
TIGR00450
98 546 449 2.50E-114
IPR004520
SUPERFAMILY
SSF52540
158 255 98 7.43E-41
IPR027417
Gene3D
G3DSA:1.20.120.430
207 267 61 5.20E-42
IPR027368
Pfam
PF12631
208 546 339 5.40E-43
IPR025867
Coils
Coil
270 290 21 – –
SUPERFAMILY
SSF52540
288 465 178 7.43E-41
IPR027417
Gene3D
G3DSA:3.40.50.300
292 330 39 8.00E-07
IPR027417
CDD
cd04164
298 470 173 2.54E-64
IPR031168
ProSiteProfiles
PS51709
300 470 171 62.071
IPR031168
Pfam
PF01926
302 423 122 2.40E-24
IPR006073
TIGRFAM
TIGR00231
302 428 127 6.10E-23
IPR005225
Gene3D
G3DSA:1.20.120.430
331 355 25 5.20E-42
IPR027368
Gene3D
G3DSA:3.40.50.300
370 468 99 2.80E-08
IPR027417
Gene3D
G3DSA:1.20.120.430
479 546 68 5.20E-42
IPR027368

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006400
Biological process TRNA modification The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0352669.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0352669.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.