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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0486000 |
| Transcript ID | LotjaGi1g1v0486000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q9STY4|RIBRX_ARATH Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|A0A1J7G1G5|A0A1J7G1G5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99913085..99918192) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGATGGCGCTATCGTGTTTCACCCCCATCATCGCGAAACCTCCTTCATCCATTATCTGCAAATGCACCAAACCCTC CACCAACCACGCGCTCGACGCCGCGTACATCAAACGCGCCGCCCTCATCGCCGACAAATCCGCCGGTTTCACTGCACCCC ACCCCAACTTCGGCTGCGTCATCGCCACCCCTTCCGGTGATGTCGCCGGCGAGGGATACCTCTACGCGGAGGGAACCACT CCTGCCGAGGTGCAGGCCGTCACCGCCGCCGGAGAGCGATGTCGCGGCGCCACTGCTTACCTCAACATGGAACCCGGCGA CTGCCACGCTGACAGTGCTGCTGTGTCTGCTCTGCTTCAGGTTTCTTCTTCGCATTCGTTTTCCGAATTCGTGTACCATG TTGATTTGGGGGGGTGCGTTTTTTTGACTCTAGTTTGTGTTTGTAGTTGACAAAATGATCCTGTATGTGAAACCAAACCA GGGAGGGGTGAAGAGAGTTGTCATTGGAATGAGGCATCCATTGCAGCATCATCGGGGCAATGCCGTGCGTGCACTCAGAG GTGAAGGACTGCAAGTTGATCTTCTTGGAGAGGATCTCACTAGTAAGCTTGTTGAGGTGTGTAGTGCAATCTGCAATGCA TCCATGCGTTTTAATTTTTGGGTTTCATTTCAATTCAAGATATTTGTATGGATCTCATTTGGGTTGTTCGATTCGTTGTT ATAGCATGTTTGTTTCCACAGTGTAATGATTTAGAATCAATTTTTGACTAGAAGCGAAGAAGTCTTAGCTTTTGAGTAAA TGTTTCTGTGCACATTGTGAAACCAAACATGCAGTTATCTCAGTGTTGTCCAATAGCGGATATCGCGGCGCTATAGCGTA GTGCTATGAGGGCTCGCTGCTATCCGCTATTTTCTGCTCTGAGGGCTTGACATAGCAGATTTTTGGCTTTCTGCTATTTT CCGCAGACTGACTTATCTTTATATTCATTGACTTTAATTGCTATGATCTTTGTTTCATGTACAGGATGCCCAGAAAGAAT GTCTTCTTGTCAATGCCCCTTTGATTTGTAGAGCTACTTCGCGCATTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTT GATGGTGAGAATTCTATTCATCCTCCCCCCTCCCTCTTTTTCATTCCCTTTCTTTAATGAATTGGAATATAGAACCTCAA AAGTGCACTATACTGGTATGTGTATCTATCTTGTCTTGTTACCTTTCTTTTGCTACATCAGGAAAAATTGCTGCTAGCTC TGGCCATGCATCATGGATAAGCAGCAAAGAATCTAGAAATCTAGTTTTTGATCTGCGAGGTAGAAGTGATGCGGTTATTG TGGGAGGAAATACAGTTCGAAAGGACAGTGAGTGTCATCATTACTATCTTTCCTTGGAAATTCAACCAGAACGAAATATT GTGGTCAGAATTTGAATTTTTTTACATTCTTTCCTTTGAAATTCAACCAGATCCAAGACTGACTGTCAGACACGGAGGTG GGCGTATGCCTGTTCGCATTGTAATGTCCCAGACTCTCAATCTTCCAGATGAAGCGCATCTATGGGACACTTCTGAGGTT TCTACCATGGTTGTAACACAGAGGGGTGCAAGGAGGAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTAGTGGA GTTTGACATGTTAAATTCCCAAGATGTTATGGAGTACTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGTGGAG GAACATTGGCTGCCTCTGCTATTTCATCCGGAGTAATTCACAAGGTTCTATTTTTCCTATTCCTTTTCTTTCACTGAGAA ATTTAAATGAAGTTCCAGTTGTTATTAGCGTAATTTACTGTTGTTTAATATATGAAGCCTAGATACATAACACAAGACAG GCAAGGTATGGCGTGGAAATGGAGATATGAAAAATTCTTAAAATCTCAGCATTCTAGAGACATTGGTATTTTGATTAACA TAATCATATCAGTAGTTGATGATTGCGATTCATAAAAAGATGCTAGTAATCATAACAATAAAATAGACATATCTTTCCCT TGTCCATATCGAAATTTCCGTTATAAATACATCATTAGTCCTATTCAAAATAAGTTTTGGCTCTATGCAATAGCCTACTA TTTACTATCTAACACTAAAGGAATCATTTTCATCTCCTGCTTTCTCATCATCCAAGAAAGTATAGTCTCTAAGTCTAGTT TATCAAGAGACAACTCTCTGATTCAACAAATCCACTGTGATTATCATGTGAATCTTGTTTCTCCACTAATGTCCCACAAC CTTGCTTCTCCTTTGGTACATCCTTCATCTTTCCTACACAAGTTAAAGGTTGATATACACATTCATTAAGGCCCCATTTG GAAGAGTTTATTTGGGCTTATCTTATAGCATTAGCGTTTATGAAAGTGTTTGAGAGAGCTGGTCTGGTTTCATTGGCTTT ATCTTGCTCTAATTTTATTTTATAATATGTTTTGACAACAGTGATGTTTATATCTGTCAGGTTTTTGCATTTATTGCTCC TAAAATTATTGGTGGAAAGAATGCACCATCTCCCGTGGGTGAACTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAA TTGATGTTCGCTATGAACAGGTTAGTGGCACTTCATTTGCCTTTCCTTTAGATGTTTTTTTTTTCCTTACAAAAATATTA GGTATGATCTTATGTATTCGTGGCTGAATTTTATCACAAGCATCTAAAGAAAATGTTGTTATGTCACTTGCACTGTATAT TTTAGTTGACCCAATACTTGTTCATGATATATTGTGCAAAGAAATTGATACTTCAAAGTTCAAATAGCAGCCACACCTTG TCGGATGCTTCTCAAACACTTTGAATATTCGGAGAAGCATTTTACATATCTTTTCACTTATATATTTCGAACTTCTTACC AACATATTGAAGATATCGACTAGTTTAACGTTGGCTGCTGAGGCCTAATACAACCCTCCTCCTTCACCCGGGCTTGGGAC CAACTATGCAAGCATAAATGGTATGGGCATGTACAAAGAAGACCTATGGAGGCACCGGTGAGGAGGGTTCATAACATGTA TGGTATTTAGTCCTCCTAAGGTAGAGGGAGGCCAAAAAGAGGTTTGGAAGATATTGTTAAAAATAATTTCAATATCAATA ATATCCCTTATAATTTGGTTTCTGGTTGACGTCAATGACGTAGTGTGATCCATATAGCTGACTTCACTTAATGGGATAAG ACTTTTGTAGTTGTTTACCAACATATAGATGGGAATACTGCAATGATGAAAGAAATAATAGCATTTTATTCTATCTATAT ACTCATGCTAAATTTTAAAGCATCTGTTCCCTCTTTTTAATTGAACTTGTGTTTCTACATTAATTATATGTGTTGTATTT TAACCATGTTGTCATTGTCTCCAATATTTTTGAAAATTTATCACATCGCAATGTCTGCATTGTGTCATATTTGTCTCTCC CTTTGTATCCATACTGCTAAGGCCTTTGCTTTTCTTTGATGGCGTTGTGTTCTGGCAATGGAAACGCAGGTTGGTCCTGA CATGCTTGTTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACTGGAGGAAACTTTTGTTGTTG ATCCTACTATCTCGCGATACGAGTCTAGCATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTTTCAAATTTC TCTCCTCATGCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGTCAAGTGTGGAGCATTTTTACCAGGTACT TGCGTTTTTGCATAAATTCTATTTTTCGTCTGAAGTTTTGTTGCATTGCTTATAGATATTGTTTGATGGATAGGCACACA AGTTTGTTGGGGCGGATGATGCTTGTGCAGATTGTGTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAGGCTGCAAAA ATAGGAAGGTCAATGCAAAGGAAACGTCCAGATCTGGTATTATGTCTAGTGGTTTTCAAACTTGTCTCAAACTCTTACGA GCTGTTTGATTATTGTTTTGTAAAACAGCTTTCACTTTTGAAAAACAGAAAGAAAAAAAACTCCTTTAATATGAACAGTT TTAAAAAACAGTTCTTATTTTCTGCTTTTAAAAAAGAAATCTCGACACATCTTAGAGATGTTTTCTGTTTTTGTCTAGTT TTTAAGTCATTGGTCCTTCAGCTTTGAAAAAAAATCGCTCAGGTAGTTGTTTCCTTTTCTTCTTTTACAAAATAGGTTTT GAAAAATGTTTCCGAAAATATTTTTAAATTCAGAAAACTAAGAAGTGAATCAAACAAACCTGTAATCTGATGTTTCTTTA CTTTCTGGATTAGAGACTAGATAGGCAATATTCATTTCCCTTGTGGCTTTTGTAACCATGTCTTCTATCATGAATGGTTT TACATCTAACATGTCGTTTAGCATTTTGGACTTGAAGCATGGAAAATACATATTCCCCACCTTATCTTGTGCTATAATTT AACTTTTTTATTTAGAAGAATAGAGGTAATAAGAATCAAACTTTCGACCACTTGATCCTTCCATACCACATCATGAACCA ACTATATTAAATGCTTAAGCTATTGGGTTAAGAAACATGAATGATTCATGTTATTGTATAAGCTAGTTTAGAACTTCAAA ACACATGTTAAAATCAGCTAGTGTCATAATGTTTAGAACTTTAAAACACGTGTGTTGGATTGGTTCTCTTCCCTTTTCAA TGTAAAGATGACTGAAAACATAATACTTTATTGGGGCAAATTCACAGGTAAGGCCTGGCTGGGACAACATGAAGATTGAT GTCATGTACAGAGCACTGAAATGCAAGTTCTCAATGTACCCACATTTGAAATCGATGCTGCTTGCAACTGCTGGTTGTGT TCTAGTTGAGGCTTCACCACATGATCTGTTCTGGGGTGGGGGGCGACAGGGAGATGGCTTAAATTATCTTGGCCAACTGT TGATGAAATTGAGATCAGAGTTTCTTGGAGAATCTTCATCAAGTGAGGCCCCTAGTTTAACTGTATAG
CDS sequence (LotjaGi1g1v0486000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCGCTATCGTGTTTCACCCCCATCATCGCGAAACCTCCTTCATCCATTATCTGCAAATGCACCAAACCCTCCAC CAACCACGCGCTCGACGCCGCGTACATCAAACGCGCCGCCCTCATCGCCGACAAATCCGCCGGTTTCACTGCACCCCACC CCAACTTCGGCTGCGTCATCGCCACCCCTTCCGGTGATGTCGCCGGCGAGGGATACCTCTACGCGGAGGGAACCACTCCT GCCGAGGTGCAGGCCGTCACCGCCGCCGGAGAGCGATGTCGCGGCGCCACTGCTTACCTCAACATGGAACCCGGCGACTG CCACGCTGACAGTGCTGCTGTGTCTGCTCTGCTTCAGGGAGGGGTGAAGAGAGTTGTCATTGGAATGAGGCATCCATTGC AGCATCATCGGGGCAATGCCGTGCGTGCACTCAGAGGTGAAGGACTGCAAGTTGATCTTCTTGGAGAGGATCTCACTAGT AAGCTTGTTGAGGATGCCCAGAAAGAATGTCTTCTTGTCAATGCCCCTTTGATTTGTAGAGCTACTTCGCGCATTCCCTT TTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGCTCTGGCCATGCATCATGGATAAGCAGCAAAG AATCTAGAAATCTAGTTTTTGATCTGCGAGGTAGAAGTGATGCGGTTATTGTGGGAGGAAATACAGTTCGAAAGGACAAT CCAAGACTGACTGTCAGACACGGAGGTGGGCGTATGCCTGTTCGCATTGTAATGTCCCAGACTCTCAATCTTCCAGATGA AGCGCATCTATGGGACACTTCTGAGGTTTCTACCATGGTTGTAACACAGAGGGGTGCAAGGAGGAGTTTCCAGAAGCTGC TTGCATCTAAAGGAGTTGAAGTAGTGGAGTTTGACATGTTAAATTCCCAAGATGTTATGGAGTACTTTCATGATCGTGGG TATCTTTCAATTTTATGGGAATGTGGAGGAACATTGGCTGCCTCTGCTATTTCATCCGGAGTAATTCACAAGGTTTTTGC ATTTATTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCCGTGGGTGAACTTGGGATGGTTGAGATGTCACAGG CTTTAAATCTAATTGATGTTCGCTATGAACAGGTTGGTCCTGACATGCTTGTTAGTGGATTTCTTCAGCCCTTACCAGAC ATGGTACCTGTAATCCCATCACTGGAGGAAACTTTTGTTGTTGATCCTACTATCTCGCGATACGAGTCTAGCATCATATT TTTCTATAAAACATGGGATCCTTACGGTGCATTTTCAAATTTCTCTCCTCATGCCATTCAAATGCCTGATGAAAATGGTG ATTATGTGACTTGGTCAAGTGTGGAGCATTTTTACCAGGCACACAAGTTTGTTGGGGCGGATGATGCTTGTGCAGATTGT GTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAGGCTGCAAAAATAGGAAGGTCAATGCAAAGGAAACGTCCAGATCT GGTAAGGCCTGGCTGGGACAACATGAAGATTGATGTCATGTACAGAGCACTGAAATGCAAGTTCTCAATGTACCCACATT TGAAATCGATGCTGCTTGCAACTGCTGGTTGTGTTCTAGTTGAGGCTTCACCACATGATCTGTTCTGGGGTGGGGGGCGA CAGGGAGATGGCTTAAATTATCTTGGCCAACTGTTGATGAAATTGAGATCAGAGTTTCTTGGAGAATCTTCATCAAGTGA GGCCCCTAGTTTAACTGTATAG
Protein sequence (LotjaGi1g1v0486000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMALSCFTPIIAKPPSSIICKCTKPSTNHALDAAYIKRAALIADKSAGFTAPHPNFGCVIATPSGDVAGEGYLYAEGTTP AEVQAVTAAGERCRGATAYLNMEPGDCHADSAAVSALLQGGVKRVVIGMRHPLQHHRGNAVRALRGEGLQVDLLGEDLTS KLVEDAQKECLLVNAPLICRATSRIPFSVLKYAMTLDGKIAASSGHASWISSKESRNLVFDLRGRSDAVIVGGNTVRKDN PRLTVRHGGGRMPVRIVMSQTLNLPDEAHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVVEFDMLNSQDVMEYFHDRG YLSILWECGGTLAASAISSGVIHKVFAFIAPKIIGGKNAPSPVGELGMVEMSQALNLIDVRYEQVGPDMLVSGFLQPLPD MVPVIPSLEETFVVDPTISRYESSIIFFYKTWDPYGAFSNFSPHAIQMPDENGDYVTWSSVEHFYQAHKFVGADDACADC VERIKSAKSPEEAAKIGRSMQRKRPDLVRPGWDNMKIDVMYRALKCKFSMYPHLKSMLLATAGCVLVEASPHDLFWGGGR QGDGLNYLGQLLMKLRSEFLGESSSSEAPSLTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 2 | 436 | 435 | 4.5E-136 | – | |
| PANTHER | 2 | 436 | 435 | 4.5E-136 | – | |
| Phobius | 3 | 8 | 6 | - | – | |
| Phobius | 9 | 12 | 4 | - | – | |
| Phobius | 13 | 593 | 581 | - | – | |
| Gene3D | 21 | 159 | 139 | 2.7E-20 | – | |
| ProSiteProfiles | 31 | 152 | 122 | 17.136 | ||
| SUPERFAMILY | 32 | 152 | 121 | 3.28E-17 | ||
| Pfam | 33 | 129 | 97 | 1.8E-5 | ||
| TIGRFAM | 37 | 390 | 354 | 6.3E-73 | ||
| Gene3D | 178 | 394 | 217 | 1.3E-61 | ||
| TIGRFAM | 185 | 392 | 208 | 1.3E-56 | ||
| SUPERFAMILY | 185 | 392 | 208 | 6.54E-52 | ||
| Pfam | 188 | 390 | 203 | 6.2E-43 | ||
| SUPERFAMILY | 413 | 581 | 169 | 5.75E-47 | ||
| Gene3D | 415 | 587 | 173 | 4.3E-53 | ||
| CDD | 424 | 577 | 154 | 4.67527E-61 | ||
| TIGRFAM | 426 | 578 | 153 | 1.5E-44 | ||
| Pfam | 427 | 579 | 153 | 1.7E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | Catalysis of the reaction: 5-amino-6-(5-phosphoribitylamino)uracil + NADP(+) = 5-amino-6-(5-phosphoribosylamino)uracil + H(+) + NADPH. | ||
| Molecular function | Diaminohydroxyphosphoribosylaminopyrimidine deaminase activity | Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(2)O + H(+) = 5-amino-6-(5-phosphoribosylamino)uracil + NH(4)(+). | ||
| Biological process | Riboflavin biosynthetic process | The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). | ||
| Molecular function | NADP binding | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0486000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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