Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR039512

Source: InterPro

Description

IPR039512 is a RCHY1, zinc-ribbon.

<p>This entry represents the zinc-ribbon domain found in RCHY1 and related proteins. RCHY1, also known as Pirh2, is a ubiquitin E3 ligase that mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, P73, HDAC1 and CDKN1B [[cite:PUB00089738], [cite:PUB00089739]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 20

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0390600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING finger and CHY zinc finger protein; TAIR: AT5G25560.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp\|Q8VZK0\|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr\|I1K915\|I1K915_SOYBN C2H2-Zn transcription factor; Found in the gene: LotjaGi1g1v0390600	Domains Coil G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF36 SM00184 SSF161219 SSF161245 SSF57850	22
LotjaGi1g1v0561900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING finger and CHY zinc finger protein; TAIR: AT5G18650.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp\|Q8VZK0\|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr\|S5U437\|S5U437_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0561900	Domains G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF38 SM00184 SSF161219 SSF161245 SSF57850	21
LotjaGi2g1v0205100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|I1KIY9\|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi2g1v0205100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|I1KIY9\|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 IPR001841 IPR008913 IPR012312 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SSF161219 SSF161245 SSF57850 cd12108	21
LotjaGi2g1v0205100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|I1KIY9\|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi2g1v0205100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|I1KIY9\|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi2g1v0274900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|I1L2P4\|I1L2P4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274900	Domains Coil G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF43 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	27
LotjaGi3g1v0484900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING finger and CHY zinc finger protein; TAIR: AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp\|Q8VZK0\|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr\|I3SWI0\|I3SWI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484900	Domains G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR013083 IPR017921 IPR027370 IPR037274 IPR037275 IPR039512 PF05495 PF13445 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF14 SM00184 SSF161219 SSF161245 SSF57850 mobidb-lite	23
LotjaGi4g1v0244600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp\|F4HVS0\|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr\|I1MTQ0\|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 NON_CYTOPLASMIC_DOMAIN PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF39 SM00184 SSF161219 SSF161245 SSF57850 TRANSMEMBRANE cd12108 cd16464 mobidb-lite	31
LotjaGi4g1v0244600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp\|F4HVS0\|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr\|I1MTQ0\|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 NON_CYTOPLASMIC_DOMAIN PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF39 SM00184 SSF161219 SSF161245 SSF57850 TRANSMEMBRANE cd12108 cd16464 mobidb-lite	31
LotjaGi4g1v0453800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.10 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains Coil G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	27
LotjaGi4g1v0453800.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 IPR001841 IPR008913 IPR012312 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 cd12108	21
LotjaGi4g1v0453800.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR039512 PF01814 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF57850 cd12108 cd16464	23
LotjaGi4g1v0453800.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|K7L4Y8\|K7L4Y8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26
LotjaGi4g1v0453800.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp\|Q8LPQ5\|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr\|A0ZT53\|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800	Domains G3DSA:1.20.120.520 G3DSA:2.20.28.10 G3DSA:3.30.40.10 IPR001841 IPR008913 IPR012312 IPR013083 IPR017921 IPR037274 IPR037275 IPR039512 PF01814 PF05495 PF13639 PF14599 PS50089 PS51266 PS51270 PTHR21319 PTHR21319:SF35 SM00184 SSF161219 SSF161245 SSF57850 cd12108 cd16464	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16464	CDD	1	5.00