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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0484900 |
| Transcript ID | LotjaGi3g1v0484900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger and CHY zinc finger protein; TAIR: AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|I3SWI0|I3SWI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90209787..90213600) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAATGTCCACTGGCTCTCTACATATAAATACTTCAAACCAATGTTCTGCATCTTCAATCAACTACCACCACAACCA CAACAAACGGATAATTTTTATTTGCACTTGCACACAGGATTATGGAAACAAAGACAGAGCTTGTTTCATCATCTTCTTCT TCTTCTCTCATCACAGATTCTTCTGAATCTAGCATAAACAACTCTTCTATGGAACTTGGAATTGAGGATTTTGGGTATGT CTTTATATTTTAAGGGTCATGTTTCATTTTCAATTTTAATCCACTTGGTTTTTTTTTTAATGAAAAAGAGAGGATTTTTG TTATATTCTTTAACCATTCTTGTTTGAATCAGCTGCACACATTACAGAAGAAAATGCAGGATCAGAGCACCTTGTTGTGA TGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGCTAAGGTGCAAAATTATTTTAAATTTATGTTCTTTTGTATTTTTA ATTTCTGGGCTTGTTTTGTTGCAAATTTTCAGCTGTGTTAGTCAGCAGAAAACTCAAATATCATGTTTCTTACTTATCTT TTCTTAATTGAACAGAACTCTGAGGAGATTAAACCTCTGGATCGTCATGATATCCCACGCCATGAAATTGAAAAGGTTTT CATTTGTTCACTCCTTAATCTTCTTGAATTTGAATTGTAAGGTCTAATTTTCTGCCAACTGTTATGTTGCACCTGGGTGT GATTATATGCTTTGAAGCATAATTAATGATAATCTGAAAAAGGAAAGTACACTGAACAAGCGTGTTTTGACCATAAAAGC GTGTCACTCCTTATAGTAATCCAGCTCAATCCAGAGAATTTGTGATTTTATACATTATAAGGTTGTGATTTTATTGACAG CAAAACAAAATCAATTACTCATGTTAGAGTAGCTAAATCTTTAATTGATTATTACATCATGTTATGAGGTTGTTCACTAT CTTATTATTATCTCCATCCTATTTCTTTGATTTTCAGGTCATCTGCTCCTTATGTGATACAGAACAAGATGTGAGTTCTT AAAACTTAACCATATAAACAATATGTGACATTATTGCTGATTAATAAAAATGTTAATATATTACTTGCATTTTCTGATGT GTTGATTGTTTCTCATACTACCAGGTTCAACAGTACTGCATAAATTGTGGAGTATGCATGGGCAAGTACTTTTGTGCTAC ATGCAAATTCTTTGACGATGATGTAAGTTCTCTAGCGTGATAGAAATTCAGTCATGTTTCCTTCTTCGTGGATGTTTGGA AATCCTCTTACAATTGGTTTCGAAGTCAAAATTAATTATGAGTGTGGCATATTTTGGAATATTGTATTAAGAAGTTGTTC AATCTTTCAGATTTCAAAAAACCAATACCATTGTGATGAATGTGGCATCTGCAGGTAAAGATCCTCAATCATTTTTCGAA CTGTTATATTTCCTACTCCACATTGCTTTAACAGAATTTGATCAATCATCTCTATATAATTGCTTTTTTTCAGAATTGGA GGCAAGGATAACTTTTTCCATTGCAAGAGATGTGGTGAGTTCACCAAATGCACTGATTAGTTTCTCTTGTACTTTTTAGT GTGTTTGGATACGAGTTGTGTACAATGTGAATGGACTTTCACCTTAATTCATAAGAAGATGAACATTCACTTTTTATCTT GAAGTGCATTTGAATGTCTATTTGCATCGATGCAAACAGATAACCAAATGTAGCCTTATGCATAAGCTGATTACAGTGAA TCTGCCAATGTTTGTTTAGGATGTTGCTACACCAAGGAAATGGAAAAGGGGCATCATTGTGTAGAAAAAGCAATGCATCA CAATTGCCCTGTTTGCTTTGAGGTAAAATATATCACTAGTACTATTCAAGTATGAAAATTTCATTATCTGTCTGATTCTC ATTGAGATGATTTCATTTTCTTTTCCACTTGCAGTATCTATTTGATACATTGAAAGATATTACAGTCTTACCTTGCGGGC ATACAATACATTTAGAGTGTGTTAAAGAGATGGAAAAACATCATAGGTAAGACATTTCTATATATGTCTCTAACGAAGAA CCAAAATGCTAAAAAAAGGGCAAACCTGATACTATAAAGCTCTCACTATGAGTGAGGTTCAGGGAGGGGCCGGACCCACT ATGTGGATCTAAGGGAAGCAGCCTTACCTTGCATTTTTGCAAGAGGCTGATTCCCCGGCTCAAAATTGTGACCACGTCAC ATGGCAGCAACCTTATCGTTGCGTCAAGACTCACCCTCTAAGATTCGAAATTTTATAATTCTGGTTTTTTTTTCCAATAT GTCATATCCATCTTATGCTGCCTTGAGCCAGTGTTATTAATTCATTCTTTGAAAATTCAGGTTCACATGTCCTGTTTGTT CAAAATCCATATGTGACATGTCAAGTTTGTGGAAGAAGCTTGACCAAGTGGTATGTGATGTAGTAATGTAGATGACAGTT TTTTTCACATTTTTTGAGAGCATATGATTACATCTATATATTTAGTATTCATATAATGATGACATTCTTGTGTTGAAACC TTGTTCAGGTTGCCTCAACTCCAATGCCTGAAACATACAGAAATAAGATGGTAAGTAGCAACTCCAACTCCAAAGCTTTT TAAGTTTTAACCTGTGAATTAATGGTAACTTGTTTGACAAATCTAATTGATTACTTGTATGAAACCAGATTTGGATACTT TGCAATGATTGTGGAGTAAACTCCAATGTGCAATTCCACATTGTGGCGCATAAGTGCTTAAGTTGCAACTCATACAACAC AAGGCAGATACAAGGAACACCTTCTACATCATGTTCATCTATGGTTTCTGAGATGGTGAGATGAGCATTGGGTTGCAGAG AGATCTCTATTTTGAACCTTGTCTTTCAATTCCTTTTGGGATGGAAACAGCACTTTTGGTGTACACAACCCAGTTTATTT ATGATGGTGGAAGAGGGTAGAAAGCTTGCTCAACAAAGTAGTCAAGCTCCAAATTTTGTAATTTTTTTTTCTTCTCTGCA TTTTTATTCTTTAACTATTCTCTCTTCTGTCCCCATCATCCTCCAAAAGAGGCCATGTTAAACAGTAAAAATGAGGAAGA ATAAACTTGCCACTGAGCATTTCTCTTGTGAGGACTTGTTGAGTCTTTGAATGGTTACAAGTACAACTGATAACAAACCC ACTAGAACTAACTAATTGAAAAACAAAGTCTCTAACTGTGATTACAAACTTCAGTTCTGAACTTCTAATAGGCCCAGTTC CAAAAAAATTTCTCTTGATTCTAATAGGCCTCACTTTTTGACAAAAAGTTGCTAAAAAAATGTGTCTCAGAGAAACAGAA GCATTAGAAGAAGTGAATAACGGTGTCAAGAGTGGGCCTTTTTAAGTGGGTTGAATTAAAAAATAGACACTTATACTTAT GTGAGTTTTTTTTTCTCAGCTCAAGGATTGGCTTTAATTGACCAAAAAAAAAAAAAAAAGGATTGGCTTTACAATTGCGC AAACTAAATAATGAAATATATGATTAAAATTATAATTTTCTATACCCTTACACATAAACCCTTTACCCGTTGTACATACA ATCGATATACGTGTTTGTAGCGAACGCCACAACTCGAAAGTTATTAAATCACATCTCTAGTTACACTGGAAGTTCAATCA TCAGAAATGTGAATGTCTAAATTATGACTAACATTGTATGTATGTAACTATGTATGTATAGAAATCATTTCGGCTTTCCA TATACACTTAATGTAACTAGCACCGCTGGAATGAAAATCCAACAACGTCCAAAG
CDS sequence (LotjaGi3g1v0484900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACAAAGACAGAGCTTGTTTCATCATCTTCTTCTTCTTCTCTCATCACAGATTCTTCTGAATCTAGCATAAACAA CTCTTCTATGGAACTTGGAATTGAGGATTTTGGCTGCACACATTACAGAAGAAAATGCAGGATCAGAGCACCTTGTTGTG ATGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGCTAAGAACTCTGAGGAGATTAAACCTCTGGATCGTCATGATATC CCACGCCATGAAATTGAAAAGGTCATCTGCTCCTTATGTGATACAGAACAAGATGTTCAACAGTACTGCATAAATTGTGG AGTATGCATGGGCAAGTACTTTTGTGCTACATGCAAATTCTTTGACGATGATATTTCAAAAAACCAATACCATTGTGATG AATGTGGCATCTGCAGAATTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTGGATGTTGCTACACCAAGGAAATG GAAAAGGGGCATCATTGTGTAGAAAAAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACATTGAA AGATATTACAGTCTTACCTTGCGGGCATACAATACATTTAGAGTGTGTTAAAGAGATGGAAAAACATCATAGGTTCACAT GTCCTGTTTGTTCAAAATCCATATGTGACATGTCAAGTTTGTGGAAGAAGCTTGACCAAGTGGTTGCCTCAACTCCAATG CCTGAAACATACAGAAATAAGATGATTTGGATACTTTGCAATGATTGTGGAGTAAACTCCAATGTGCAATTCCACATTGT GGCGCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAAGGAACACCTTCTACATCATGTTCATCTATGG TTTCTGAGATGGTGAGATGA
Protein sequence (LotjaGi3g1v0484900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METKTELVSSSSSSSLITDSSESSINNSSMELGIEDFGCTHYRRKCRIRAPCCDEVFDCRHCHNEAKNSEEIKPLDRHDI PRHEIEKVICSLCDTEQDVQQYCINCGVCMGKYFCATCKFFDDDISKNQYHCDECGICRIGGKDNFFHCKRCGCCYTKEM EKGHHCVEKAMHHNCPVCFEYLFDTLKDITVLPCGHTIHLECVKEMEKHHRFTCPVCSKSICDMSSLWKKLDQVVASTPM PETYRNKMIWILCNDCGVNSNVQFHIVAHKCLSCNSYNTRQIQGTPSTSCSSMVSEMVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 9 | 290 | 282 | 3.7E-162 | – | |
| PANTHER | 9 | 290 | 282 | 3.7E-162 | – | |
| ProSiteProfiles | 32 | 108 | 77 | 25.086 | ||
| SUPERFAMILY | 37 | 110 | 74 | 1.44E-16 | ||
| Pfam | 39 | 120 | 82 | 1.9E-18 | ||
| ProSiteProfiles | 110 | 174 | 65 | 33.892 | ||
| SUPERFAMILY | 111 | 168 | 58 | 5.36E-18 | ||
| Gene3D | 159 | 247 | 89 | 6.7E-11 | ||
| SUPERFAMILY | 173 | 223 | 51 | 2.19E-10 | – | |
| ProSiteProfiles | 175 | 218 | 44 | 12.209 | ||
| SMART | 175 | 217 | 43 | 5.5E-7 | ||
| Pfam | 175 | 215 | 41 | 3.4E-7 | ||
| Pfam | 222 | 280 | 59 | 1.2E-25 | ||
| Gene3D | 248 | 288 | 41 | 2.0E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0484900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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