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RING-type zinc-finger
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| | 9 | ||
– | SymRK interaction E3 ligase [Lotus japonicus] gi|388267601|gb|AFK25801.1| | 20 | ||
– | PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| | 29 | ||
– | CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| | 11 | ||
– | CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| | 16 | ||
– | RING/U-box superfamily protein [Theobroma cacao] gi|508709866|gb|EOY01763.1| | 15 | ||
– | PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| | 27 | ||
– | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356539356|ref|XP_003538164.1| | 22 | ||
– | PREDICTED: protein RMD5 homolog A-like isoform X2 [Cicer arietinum] gi|502077391|ref|XP_004485638.1| | 22 | ||
– | E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 | 30 | ||
– | E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 | 30 | ||
– | Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 | 15 | ||
– | Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 | 15 | ||
– | Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 | 15 | ||
– | Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 | 15 | ||
– | E3 ubiquitin-protein ligase; TAIR: AT2G38920.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein; Swiss-Prot: sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like; TrEMBL-Plants: tr|A0A151TVX6|A0A151TVX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0741800 | 16 | ||
– | RING-type E3 ubiquitin ligase; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|C6TIH4|C6TIH4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 | 15 | ||
– | Ubiquitin-protein ligase, putative; TAIR: AT1G69330.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8K0W3|RN208_MOUSE RING finger protein 208; TrEMBL-Plants: tr|I1JEB9|I1JEB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0297200 | 15 | ||
– | E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr|A0A151SEQ5|A0A151SEQ5_CAJCA E3 ubiquitin-protein ligase PRT1; Found in the gene: LotjaGi3g1v0081200 | 21 | ||
– | Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 | 32 | ||
– | Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A1J7IRE0|A0A1J7IRE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 | 29 | ||
– | Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 | 32 | ||
– | Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 | 32 | ||
– | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 | 20 | ||
– | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 | 20 | ||
– | RING finger and CHY zinc finger protein; TAIR: AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|I3SWI0|I3SWI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484900 | 23 | ||
– | E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 | 32 | ||
– | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|I1JQL7|I1JQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 | 16 | ||
– | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 | 15 | ||
– | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 | 22 | ||
– | Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd16652 | CDD | 1 | 3.23 |