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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0561900 |
| Transcript ID | LotjaGi1g1v0561900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger and CHY zinc finger protein; TAIR: AT5G18650.1 CHY-type/CTCHY-type/RING-type Zinc finger protein; Swiss-Prot: sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1; TrEMBL-Plants: tr|S5U437|S5U437_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0561900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109403414..109406938) extracted from Lotus japonicus Gifu genome v1.2.
AAATATTTATGTTTCTTAATTTGGATATTAGAGTTGTTAGTCTTCTTTCAAAATAAGAATTAACATCCTATGAGCTTCTC CACATCTCCGAATTCCCATTCGTTAATCAGACGGCAATATTCCTTTGTTTCCTGCTGAAGCCACACTTGCTTCTGGCAGT GGCATCCACCATCACCTTATCCTCTCCTTCTCTATCATCACAATTCACAATCAATCACAAACTAGTAGTAATATTAAACT ATTGCATAAAAAAAGCACAAGTGTGGTCCTTAAAATGTGAACAATGGCTACTTTTTTCTGTTGCGGATCAATCCAAACCA ACCCAACAAATCTTCCCATATCAGGAAACTAGCCTTCCTTCTCTTCTCCAAATCATGGAAGGCTCTGTTTCTGAACGTCT TGATTTTGGGAAGATGGAACATGGGTATTCTTCTTTTGCCCCTGTCTCTTCATTCACTGTCTTCAGTTTTCTCTGTTTTT TTACTTTTTTTCTTCGTGGGTATTGTGGGTTTGATTGGTAGGTGCAAGCATTACAGGAGAAGATGCAGGATTCGTGCTCC CTGCTGCAACGAGATCTACTCCTGCCGCCATTGTCACAACGAGGCAACGGTATTTCAATCTTCATTTCCAGATCAAAGGT TTTGTCTTTCTGCTTTTTACTCATCTGGGTCTGTCTTAATTTCCTTACTTGTTCTGGCTTCACTAGAGCATGTTGAAGAA TCACTCTGATAGGCACGAACTGGTTCGCCAAGATGTTAAACAAGTATGATAAATGGAAAATACTTACTGTCTTTCAATTT TGCTGATCAATTTATTTAAGTGATCAATAGGAGATGATAGGAATAATTCACTTATTACATCTTGCTGTTTCAGGTTGTTT GTTCTGTTTGTGACACTGAACAGCCAGTAAGTATTGAATCCACACTAACTGATTTCCTTTTTGTTGGGGGGTTGGATTGG TTAAGGTTCTGATTTTAATTCTGTTTCTTTTAAAGGCTGCTCAAGTTTGCACAAATTGTGGTGTCAAAATGGGAGAATAT TTCTGCGACATCTGCGTATTCTTCGATGATGATGTAATGCTTCACTGAACTAAATATATAATTTGGTGTATCTGATTAGC TTTTACTTCTTAAATATAATTGATCCTCTTCTACTTAGGTCCTTACTGCTTAGAGCTGGGCATAACTTGTTGTAGAGCCA TGGTTTTTGATTGTTTATGGCATTTGTTTCCTTGATGGTGCTGACCAATGTTTAATCAATTTGTAGGCAGAGAAACAACA GTTTCATTGTGATGATTGTGGGATCTGCAGGTGGGTGGGCTGTATTGTGTAACTTGTGTTTGCGTAGATTTTTATGTCAT ATCCTCAATTAAGTTACCTAAATTTATGAAATGCAAACTAATTTTGGTTTTGTCATTTGGAAACAGGGTTGGTGGGCGAG AAAATTTTTTCCACTGCAAGAAATGCGGTACGCATTCACCATCGAAGCTACCATTTTGGCTTTATTGTTGCTTTTACATT CTTCTTTCCAAAATTAAGTTAGGATATGTTTCAAATTGTTTGTTTACATATTATAGCAGACTCAATTTTTCCTGAGTTTG TCACTACTTTATTTATCATGTGAAGTGTTAATATCACATATTATTTCAGTTAGGTATATAGGGAGAGAATACCTATAACG ACCGGGCAATACATTACCACTTACTTTGGGGGTATTGTGAATCCATTCCATTTCCAGTTCTGATATGAATTACATAAGTT GATGATAATTTATCGAGTTAACTCATTTAAGTAATAATAATTGGTAGATTTTACATATTAAAATTAGTAGGCTTTATGTT TCTGAAGCAAAGTCAGGATATTACATGTTTCAAATTCAGTCCTTGATCTATAGCATTTTCAAATTGTGGTTAGATTGTTA GTTGATCTGTATAATTAATTTTCCATTTGATTTCGTTAATCACTTGATCTTTGCCAGTGCCCAGTTCCGTATGAGGGAAG AGTTTAAACTGATTAAAATTTTGATTTTTTTTTTCTTTTAACTTCCGGAGTCATATATAATAGCATACTGCATTAGTCAC TGATTCGAACTATTTTTTAACAAATAAGTTGCTCAATACTTATATGCAAAGAATCTACGTAGTGATAAATGTTTTATGAG CTGCAGGGTCTTGCTACTCAGTTGGTCTACGTGATAATCATATATGTGTGGAGAACTCCATGAGGCATCACTGTCCTATT TGTTATGAGGTGCATGCTTTGTTCCCTCCCTTTCCCTGACTTTTGTTTTCAATCAAAAAGGGAATTTCTCTTGGATGTCA TTGGAAACTTGAGAATAATTTGATGTGGCTCTATTTTATTTGTGCAGTACCTTTTTGATTCACTGAAAGACACTGCTGTT ATGAAATGTGGTCACACGATGCACTCTGAATGCTACCATGAAATGATAAAACGTGACAAGTGAGTATGTTAACTATTTGA GATTTCTTTGTGGACATGATTTCTGCTTAATTTGTAACTTGATTTGGTATCTGGCTCAGTTACTGTTGTCCCATATGCTC CAAGTCAATAGCTGACATGTCTATGATGTGGAAGAGGACTGATGAAGAGGTAGCTGAATAAATTAAAGCACACAAATGCT TTACTTGATATTTTGTCATGCATTCATCTGCTCAAGAATATTGCTTACATGATATTGTTCTCAATTATGATTTCTTGCTG ATTTGTTTATTTTCATTTCTTATTAGATTGAGGCAACTGTCATGCCTGAAGTTTATCGGTACAGAAAGGTGATGTTTTAT TCTTTGTTCTGCTTGGCTAATACCTACCAATCTCTGTTTATCTATAATTCTTTCTAGACATGTAGTATCATGGTTCTTTC AGAACTGCTATTGATTGATATAACTATGTCATTGCAGGTCTGGATACTATGTAATGACTGCAACAACACAACCGAAGTTT ACTTCCATATTCTTGGGCAAAAATGCGGTCACTGCAGATCATATAACACTCGTGCAATTTCACCTCCAATTTGCCCTCAA TGACCAGATTCTTATGGTGAAAGACAGACACTGGCAGGCAGAAAATTATAGTTTGCACCCCGGTTATTTTAGAGGGTTTA TTGAATTGATTCAGCATCTTCTAGAGTATTGTGCTCTAGATAATTTTATCTTTCTTCCTCCAACATATTGAGTGGATTGA TATCATTCATCATTTATAAACTTATGTATACAGGGGAAACTGTTTTCCCATCATGAACTATTGGTATTAGATGATTGCAA TTAAATTTAATCCGTACAACTTAGCAATTCCTTACATAATCAGCTTCATGATCATTTCGATTTCGTACAAGAGGTTCAGT TTAACAGTATGAGGAGTGGCATGGCCTATGAAACAGGTTGGGCAAGTTGTTGGATAGAAACAAGCCTAAAAAATACTAGC TGATTTTCAAACTTTATAATAAGGTGCTGACTGACATGAATTGAACATTATACCAATCAGGCTTGGCAAAATTTGATGGG TTCAT
CDS sequence (LotjaGi1g1v0561900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCTCTGTTTCTGAACGTCTTGATTTTGGGAAGATGGAACATGGGTGCAAGCATTACAGGAGAAGATGCAGGAT TCGTGCTCCCTGCTGCAACGAGATCTACTCCTGCCGCCATTGTCACAACGAGGCAACGAGCATGTTGAAGAATCACTCTG ATAGGCACGAACTGGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCTGTTTGTGACACTGAACAGCCAGCTGCTCAAGTT TGCACAAATTGTGGTGTCAAAATGGGAGAATATTTCTGCGACATCTGCGTATTCTTCGATGATGATGCAGAGAAACAACA GTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGGCGAGAAAATTTTTTCCACTGCAAGAAATGCGGGTCTTGCT ACTCAGTTGGTCTACGTGATAATCATATATGTGTGGAGAACTCCATGAGGCATCACTGTCCTATTTGTTATGAGTACCTT TTTGATTCACTGAAAGACACTGCTGTTATGAAATGTGGTCACACGATGCACTCTGAATGCTACCATGAAATGATAAAACG TGACAATTACTGTTGTCCCATATGCTCCAAGTCAATAGCTGACATGTCTATGATGTGGAAGAGGACTGATGAAGAGATTG AGGCAACTGTCATGCCTGAAGTTTATCGGTACAGAAAGGTCTGGATACTATGTAATGACTGCAACAACACAACCGAAGTT TACTTCCATATTCTTGGGCAAAAATGCGGTCACTGCAGATCATATAACACTCGTGCAATTTCACCTCCAATTTGCCCTCA ATGA
Protein sequence (LotjaGi1g1v0561900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSVSERLDFGKMEHGCKHYRRRCRIRAPCCNEIYSCRHCHNEATSMLKNHSDRHELVRQDVKQVVCSVCDTEQPAAQV CTNCGVKMGEYFCDICVFFDDDAEKQQFHCDDCGICRVGGRENFFHCKKCGSCYSVGLRDNHICVENSMRHHCPICYEYL FDSLKDTAVMKCGHTMHSECYHEMIKRDNYCCPICSKSIADMSMMWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEV YFHILGQKCGHCRSYNTRAISPPICPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 264 | 264 | 1.7E-156 | – | |
| PANTHER | 1 | 264 | 264 | 1.7E-156 | – | |
| ProSiteProfiles | 11 | 86 | 76 | 25.958 | ||
| SUPERFAMILY | 15 | 87 | 73 | 4.32E-18 | ||
| Pfam | 18 | 98 | 81 | 1.8E-20 | ||
| ProSiteProfiles | 88 | 152 | 65 | 34.312 | ||
| SUPERFAMILY | 89 | 146 | 58 | 2.62E-20 | ||
| Gene3D | 138 | 225 | 88 | 1.3E-11 | ||
| Pfam | 152 | 195 | 44 | 2.1E-6 | ||
| SUPERFAMILY | 152 | 204 | 53 | 8.33E-11 | – | |
| SMART | 153 | 195 | 43 | 9.4E-6 | ||
| ProSiteProfiles | 153 | 196 | 44 | 11.634 | ||
| Pfam | 201 | 258 | 58 | 7.3E-26 | ||
| Gene3D | 226 | 263 | 38 | 4.5E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0561900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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