Domain Predictions — View

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MF_03134

Source: Hamap

Description

Probable alanine--tRNA ligase, chloroplastic.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0009507 View details of GO:0009507 AmiGO InterPro QuickGO	Cellular component	Chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.	Subterm of GO:0009536

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3330180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi\|356516209\|ref\|XP_003526788.1\|	Domains Coil G3DSA:3.30.930.10 IPR002318 IPR003156 IPR009000 IPR012947 IPR018162 IPR018163 IPR018164 IPR018165 IPR023033 IPR027522 MF_00036_B MF_03134 PF01411 PF02272 PF07973 PR00980 PS50860 PTHR11777 PTHR11777:SF14 SM00863 SSF101353 SSF50447 SSF55186 SSF55681 TIGR00344 cd00673	28
Lj1g3v3330180.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi\|356516209\|ref\|XP_003526788.1\|	Domains Coil G3DSA:3.30.930.10 IPR002318 IPR003156 IPR009000 IPR012947 IPR018162 IPR018163 IPR018164 IPR018165 IPR023033 IPR027522 MF_00036_B MF_03134 PF01411 PF02272 PF07973 PR00980 PS50860 PTHR11777 PTHR11777:SF14 SM00863 SSF101353 SSF50447 SSF55186 SSF55681 TIGR00344 cd00673	28
LotjaGi1g1v0556500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp\|B9HQZ6\|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|V7AUH7\|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500	Domains Coil G3DSA:2.40.30.130 G3DSA:3.10.310.40 G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 IPR002318 IPR003156 IPR009000 IPR012947 IPR018162 IPR018163 IPR018164 IPR018165 IPR023033 IPR027522 MF_00036_B MF_03134 PF01411 PF02272 PF07973 PR00980 PS50860 PTHR11777 PTHR11777:SF14 SM00863 SSF101353 SSF50447 SSF55186 SSF55681 TIGR00344 cd00673	32
LotjaGi1g1v0556500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp\|B9HQZ6\|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|V7AUH7\|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500	Domains Coil G3DSA:2.40.30.130 G3DSA:3.10.310.40 G3DSA:3.30.54.20 G3DSA:3.30.930.10 G3DSA:3.30.980.10 IPR002318 IPR003156 IPR009000 IPR012947 IPR018162 IPR018163 IPR018164 IPR018165 IPR023033 IPR027522 MF_00036_B MF_03134 PF01411 PF02272 PF07973 PR00980 PS50860 PTHR11777 PTHR11777:SF14 SM00863 SSF101353 SSF50447 SSF55186 SSF55681 TIGR00344 cd00673	32

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00673	CDD	1	25.00