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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042400 |
| Transcript ID | LotjaGi4g1v0042400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SN36|A0A0B2SN36_GLYSO Glutamyl-tRNA reductase; Found in the gene: LotjaGi4g1v0042400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4993158..4995899) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATATTAACATTCCTAACTTCCTTCCTTCATTATTCATTCTTCATTCGTCAACTTCTCCTCCTCCAATGGCGGCCGT GGATGTTTCCTCCGCCGCCGCCACTATCACCGCCGCGCTTCCCTCCTCCCGCCGCTGTCCTTCTCAACCGCCCAATCAAA TCCGCATCCTCTCCAAACCCTCCTCCTCAACCCTTCGACTCTCTCTCAACCCCAGATGCAGCAACCTCGCGCAAAATCCA GTCCCCAAAAACGCCGTCGTTTCCAAGCTTTCCCCTCTCGAGTTGCTCAAGTCTTCCGCCGCCGACAGTGAGTTTTGATC TGTTCACGTTGTGGGGTGTTGTGGAGTTTAAGGTTTTTGTGTTTGATTGTGTCTCTGTTTGTTTCTTTGTAGGATATACG AAGGAAAAGAGTAGCATCATTGCCATTGGACTGAATGTTCATACTGCTCCGGTTGAGCTACGTGAGAAGCTTGCGATCGC TGAAGAGAAATGGCCTCAGGTGATTGAAGAGCTTTGTGGTTTGAATCATATTGAAGAAGCTGCTGTTCTTAGCACTTGTA ACCGGATTGAGATTTATGTTGTGGCTCTCTCCCAGAATCGTGGTGTTAGGGAAGTCACTCAGTGGATGTCAAAGGTATAT AAAAAGATTGAGATTTATGGGCATGTTTAGTTTCATAAATTGCTTCATATATGTTTTCACTTTTTAGTTTGTTTTCTGTT TTATTTTCAAATGATTTGGAAAAGTGAACTTGTTTTGTTATTAGTGAGTGAATCTTAGAAAACAAGAAATAGAATGAAAA CAAAGTGAATTTTTTGGTAAATATTAGTGAGATAACAGGAAAAGTTTTTTAAAATGCATGTTTCGAAATCCTCTTACAAC TGATTCTGAAGTTAGAATCGCTTCGTTTATGTGAGTAGATTCTGGATTTCAGAATTGATTCTGAGAAAATAGAAGCTAAT CCGAACATTCTATAAATGAGACTGGTTCAAGAATTTTGTATCCTTAATTTTGTTTAATAAACGTATGTTATGAGAAATCA GGAGTTCAGGACAGAAGATCACTCTTGTATTGTTTTATCTTGGCAGATGAGTGGGGTTCCAATACCAGAGCTCCAGGAGC ACCAGATGTTGCTGTATAACAAGGATGCCACACAGCATTTGTTTGAAGTAGCTGCTGGGCTTGACTCCCTTGTTCTAGGG GAGGGTCAGATTCTTGCTCAGGTGAAGCAAGTTGTGAAAACTGGACAAGGAGTGTCTGGTTTTGGTCAGATGATGAGTGG GATGTTCAAGCAGGCAATCTCTGCCGGGAAGCGGGTTCGGAGCGAGACTAACATTGCTTCTGGATCAGTTTCTGTTAGCT CTGCTGCTGTGGAGCTGGCACAGATGAAGCTTTCAGAGTCTTCCTTTGCTGATGCCAGAGTGTTAGTAATTGGGTCAGGA AAGATGGGTAGACTTGTGATTAAGAACTTGGCTGCAAAAGGGTGCAAAAAGATGGTGATTGTTAACAGAACTGAAGAGAA AGTCAATGCCATTAGGCGAGAGATGAAAGATGCTGACATTGTTTTCAGACCTCTTTCAGAAATGCTTGATTGTGCTGCTG AAGCTGATGTAATCTTCACCAGCACAGCATCTGAATCTCCTCTATTCTCAAAAGAGAATGTGGAGAGGCTTCCTCTAGTT AGCCAAGGTGCAAGGAGACGACTTTTCATTGATATATCTATGCCTAGGAATGTTGAACCGGGGGTTTCAGATCTGGAGAC CGCACTTGTGTACAATGTGGATGATCTTCGGGAAGTTGTTGCAGCAAACAAGGAGGACAGGCTCCAGAAAGCTATGGAAG CGCGAGGAATAATCCAGGAGGAGTTGAATAAATTCGAAGCGTGGAAAGACTCCTTGGAAACTGTACCTACTATTAAGAAA TTTAGAGCTTATGCTGAAAGGATTAGTTCCTCTGAGGTGGAGAAGTGTTTGTCGAAGATGGGTAATGACATCTCAAAGGA GCAAAAAGATGCAATATATTCACTTGGTATGGGCATTGTGAATAAGCTTCTTCACGGTCCTATGCAGCATTTGAGGTGTG ATGGGAATGATAATCGTTGTTTGAGTGAAGTACTCGAGAATATGCGCGCTCTTAACAGAATGTATGATCTTGAGACAGAA ACTTCCTTGATAGAAGAAAAGATCAAAGCCAAGATGGAACGGGTTCAAAAGTAAACTCTCCTTAAAATTGTCGTCATTTT ATACGTTTCCTAGTGCGGCTTCAACCCTTACCTCTTCTTGTACACTACAATAGTGAATTGAGGCCCTTTGGAGACTAATT CTTTTATTTTTTTTAACTAAACTAAAAAGGGAATAAACATTGATATAGGAGTGTAGTTGACGATTCATGATTCTCATGAC AACAGAGATTCTTTGCTTGTATACTTTTTTTTTTTTGAACCTTCTTTGCTTGTATACTTAATAACATTGTTTTAGATAGT GTAATATTTACCTTTGAAGTTTGGATGCTTTAAGTGTGTATTATTTAACATAACTTTTTTTTTGTCCTTAATTTTCTCAT TCTATCTTAACTAAATCAAGTATGGGGCAGAAATCTATTCTTCCCACAAAGTGGGAGAAGTTTTTATTTGAGCTGAATAA TTGAAGTAGTTAGTAGTTGTAAAACTGAATGAGTTCGGGATTTATGTTGTCGCTCTCTCCCAGAACCGTGGTGTTAAGGA AGTCACTGAGTGGATGTCAAAG
CDS sequence (LotjaGi4g1v0042400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCGTGGATGTTTCCTCCGCCGCCGCCACTATCACCGCCGCGCTTCCCTCCTCCCGCCGCTGTCCTTCTCAACC GCCCAATCAAATCCGCATCCTCTCCAAACCCTCCTCCTCAACCCTTCGACTCTCTCTCAACCCCAGATGCAGCAACCTCG CGCAAAATCCAGTCCCCAAAAACGCCGTCGTTTCCAAGCTTTCCCCTCTCGAGTTGCTCAAGTCTTCCGCCGCCGACAGA TATACGAAGGAAAAGAGTAGCATCATTGCCATTGGACTGAATGTTCATACTGCTCCGGTTGAGCTACGTGAGAAGCTTGC GATCGCTGAAGAGAAATGGCCTCAGGTGATTGAAGAGCTTTGTGGTTTGAATCATATTGAAGAAGCTGCTGTTCTTAGCA CTTGTAACCGGATTGAGATTTATGTTGTGGCTCTCTCCCAGAATCGTGGTGTTAGGGAAGTCACTCAGTGGATGTCAAAG ATGAGTGGGGTTCCAATACCAGAGCTCCAGGAGCACCAGATGTTGCTGTATAACAAGGATGCCACACAGCATTTGTTTGA AGTAGCTGCTGGGCTTGACTCCCTTGTTCTAGGGGAGGGTCAGATTCTTGCTCAGGTGAAGCAAGTTGTGAAAACTGGAC AAGGAGTGTCTGGTTTTGGTCAGATGATGAGTGGGATGTTCAAGCAGGCAATCTCTGCCGGGAAGCGGGTTCGGAGCGAG ACTAACATTGCTTCTGGATCAGTTTCTGTTAGCTCTGCTGCTGTGGAGCTGGCACAGATGAAGCTTTCAGAGTCTTCCTT TGCTGATGCCAGAGTGTTAGTAATTGGGTCAGGAAAGATGGGTAGACTTGTGATTAAGAACTTGGCTGCAAAAGGGTGCA AAAAGATGGTGATTGTTAACAGAACTGAAGAGAAAGTCAATGCCATTAGGCGAGAGATGAAAGATGCTGACATTGTTTTC AGACCTCTTTCAGAAATGCTTGATTGTGCTGCTGAAGCTGATGTAATCTTCACCAGCACAGCATCTGAATCTCCTCTATT CTCAAAAGAGAATGTGGAGAGGCTTCCTCTAGTTAGCCAAGGTGCAAGGAGACGACTTTTCATTGATATATCTATGCCTA GGAATGTTGAACCGGGGGTTTCAGATCTGGAGACCGCACTTGTGTACAATGTGGATGATCTTCGGGAAGTTGTTGCAGCA AACAAGGAGGACAGGCTCCAGAAAGCTATGGAAGCGCGAGGAATAATCCAGGAGGAGTTGAATAAATTCGAAGCGTGGAA AGACTCCTTGGAAACTGTACCTACTATTAAGAAATTTAGAGCTTATGCTGAAAGGATTAGTTCCTCTGAGGTGGAGAAGT GTTTGTCGAAGATGGGTAATGACATCTCAAAGGAGCAAAAAGATGCAATATATTCACTTGGTATGGGCATTGTGAATAAG CTTCTTCACGGTCCTATGCAGCATTTGAGGTGTGATGGGAATGATAATCGTTGTTTGAGTGAAGTACTCGAGAATATGCG CGCTCTTAACAGAATGTATGATCTTGAGACAGAAACTTCCTTGATAGAAGAAAAGATCAAAGCCAAGATGGAACGGGTTC AAAAGTAA
Protein sequence (LotjaGi4g1v0042400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVDVSSAAATITAALPSSRRCPSQPPNQIRILSKPSSSTLRLSLNPRCSNLAQNPVPKNAVVSKLSPLELLKSSAADR YTKEKSSIIAIGLNVHTAPVELREKLAIAEEKWPQVIEELCGLNHIEEAAVLSTCNRIEIYVVALSQNRGVREVTQWMSK MSGVPIPELQEHQMLLYNKDATQHLFEVAAGLDSLVLGEGQILAQVKQVVKTGQGVSGFGQMMSGMFKQAISAGKRVRSE TNIASGSVSVSSAAVELAQMKLSESSFADARVLVIGSGKMGRLVIKNLAAKGCKKMVIVNRTEEKVNAIRREMKDADIVF RPLSEMLDCAAEADVIFTSTASESPLFSKENVERLPLVSQGARRRLFIDISMPRNVEPGVSDLETALVYNVDDLREVVAA NKEDRLQKAMEARGIIQEELNKFEAWKDSLETVPTIKKFRAYAERISSSEVEKCLSKMGNDISKEQKDAIYSLGMGIVNK LLHGPMQHLRCDGNDNRCLSEVLENMRALNRMYDLETETSLIEEKIKAKMERVQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 16 | 535 | 520 | 8.5E-288 | – | |
| PANTHER | 16 | 535 | 520 | 8.5E-288 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 535 | 513 | - | – | |
| Gene3D | 86 | 243 | 158 | 6.5E-56 | ||
| Hamap | 87 | 513 | 427 | 26.788 | ||
| SUPERFAMILY | 87 | 243 | 157 | 4.32E-41 | ||
| TIGRFAM | 88 | 496 | 409 | 7.6E-117 | ||
| CDD | 88 | 409 | 322 | 2.40574E-95 | – | |
| Pfam | 91 | 241 | 151 | 5.3E-43 | ||
| ProSitePatterns | 184 | 207 | 24 | - | ||
| SUPERFAMILY | 246 | 405 | 160 | 3.38E-29 | ||
| Gene3D | 247 | 398 | 152 | 1.2E-42 | – | |
| Pfam | 256 | 397 | 142 | 9.2E-44 | ||
| Coils | 299 | 319 | 21 | - | – | |
| SUPERFAMILY | 409 | 497 | 89 | 6.02E-18 | ||
| Pfam | 411 | 515 | 105 | 4.3E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Glutamyl-tRNA reductase activity | Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H(+) + NADPH. | ||
| Biological process | Tetrapyrrole biosynthetic process | The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. | ||
| Molecular function | NADP binding | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0042400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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