Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF02178

Source: Pfam

Description

AT hook motif

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj0g3v0055859.1
– AT DNA binding protein (Thy28) [Aspergillus niger CBS 513].88] gi|145257371|ref|XP_001401706.1|
Domains
8
Lj0g3v0217419.1
– HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1|
Domains
17
Lj0g3v0351139.1
– Nitrite reductase [uncultured marine bacterium] gi|363586052|gb|AEW29026.1|
Domains
8
Lj1g3v0606380.1
– Related to DNA ligase (ATP) [Claviceps purpurea 20].1] gi|399166869|emb|CCE32226.1|
Domains
4
Lj2g3v2560000.1
– High mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1|
Domains
17
Lj6g3v0423840.1
– HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1|
Domains
17
LotjaGi1g1v0007100_LC.1
– Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P79987|HIRA_CHICK Protein HIRA; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0007100_LC
Domains
4
LotjaGi1g1v0092300.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300
Domains
18
LotjaGi3g1v0227100_LC.1
– AT hook motif DNA-binding family protein; TAIR: AT4G00200.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q4V3E0|AHL7_ARATH AT-hook motif nuclear-localized protein 7; TrEMBL-Plants: tr|I3SDN1|I3SDN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0227100_LC
Domains
2
LotjaGi4g1v0147700_LC.1
– HMG-Y-related A; TAIR: AT5G27890.1 hypothetical protein; Swiss-Prot: sp|A6ZMG6|MYO5_YEAS7 Myosin-5; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0147700_LC
Domains
12
LotjaGi6g1v0056500.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0056500
Domains
18
LotjaGi6g1v0056600.1
– HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600
Domains
17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 8.33