Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0092300 |
| Transcript ID | LotjaGi1g1v0092300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13568955..13570373) extracted from Lotus japonicus Gifu genome v1.2.
AAATTAAATTAAATCTATTTCCAATCTTCAATTCATTTATTTATCTCCCTTTAAATTCAATTCCTAGATCCATGAAACTC TGTCCCCATATCCAACACACCCCTTTTACAGAATAATTTCGATCCTTCCCCTGTCAAACGTTGTCTTTTTCACTCTTCAA CTCTGCTATAGCTTTGAAGCTTCTCCATCACCTTCAACTTCCATGGCCACTGAAGAGGTTAATAAACCTTCATCACTCCC TCCCTACCCTGAGGTAAACCCACACCCAAATCAATTTTCTTTTGACACTGACCCATTTGAGCTGTTCATTTTTACCAACT TGGGTCTTCAATATATTTTTCACCATGCTTGAATTTAGAATAATTCTTCAAACAGAGGAAGAAATTAGGGTTTTTGAGCA ATTTAAGCTAACTGATTTAAGGGAACATTTATAGAATTAATCTTGATTGTTTTGTTTTCTCACAAACCCATCAATATTAA CTGAAAATTATTTGTTTTTTTGTCAATGGTTAACTGTGGGTGATTGATTCTGTTGTTGCAGATGATAATGGAAGCACTGG AATCACTGAACAAACCCAATGGATCCAACAAGTCAGCAATATCAAGCTATATAGAATCCAATCATGGTGAATTGCCAGAA ACTCATGCAACTCTTCTCATTCTTCACCTCAACCAGATGAAAGAGAGTGGGGAGCTTGTGTTCTTGAACAACAACTACAT GAAGCCTGACCCAAATGCCCCACCTAAGAGGGGACGTGGCAGGCCACCCAAGCCCAAGGCTGCTCTGCCTCTAGACACTG TGGTGGCCCCACCAAGGCCCAGGGGTCGTCCACCAAAGGATCCTAATGCTGAGCCAAAGCCCAAGGTGGTGTCAATTGCA AGTGGCAGGCCTAGAGGCCGGCCCAAGAAGGTTGCCCGGTCGGCTGCGGCGGCGTCTCCGGGCGCTGCTGTTTCTAGTGG GAGGCCCAGGGGGAGGCCTCCTAAGGTGAAGCCTCAATTGACTGAAGTCAGCGTTGAATCATAGAGTGTGCCTTGTGATT GTGGTGGTCTTAGACAATGTAGGGAATTTGGTCTTTGTGTCAATGTAATTTTTGCTTTGTAAAATTATGTAGTGGTAGCT TAGTTTATGAGAATGAGAGTCTTTGTTTATTTTTTACTTTTTTCCTTAATTGTCTAAGAGGACAATGACTTGAGCTGATT ATGATTTGGTGTTGTGTTTTGAAGTTCTAACTTAAACCTGATATAATGCAGAAAAGGGTGCTTTTTCAGACTTTAATATG ATTTTAATTCTTGGTTATTCCGCAGGGAAAGCAATCTTAACCGCGTATTTAATTTAAATTAAAACAATGATGGAGTCATG GACCTCAATGTATTGTGATGTAGTAATAATTTGACTATATCGTGCTTGGTAAGAGAACC
CDS sequence (LotjaGi1g1v0092300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTGAAGAGGTTAATAAACCTTCATCACTCCCTCCCTACCCTGAGATGATAATGGAAGCACTGGAATCACTGAA CAAACCCAATGGATCCAACAAGTCAGCAATATCAAGCTATATAGAATCCAATCATGGTGAATTGCCAGAAACTCATGCAA CTCTTCTCATTCTTCACCTCAACCAGATGAAAGAGAGTGGGGAGCTTGTGTTCTTGAACAACAACTACATGAAGCCTGAC CCAAATGCCCCACCTAAGAGGGGACGTGGCAGGCCACCCAAGCCCAAGGCTGCTCTGCCTCTAGACACTGTGGTGGCCCC ACCAAGGCCCAGGGGTCGTCCACCAAAGGATCCTAATGCTGAGCCAAAGCCCAAGGTGGTGTCAATTGCAAGTGGCAGGC CTAGAGGCCGGCCCAAGAAGGTTGCCCGGTCGGCTGCGGCGGCGTCTCCGGGCGCTGCTGTTTCTAGTGGGAGGCCCAGG GGGAGGCCTCCTAAGGTGAAGCCTCAATTGACTGAAGTCAGCGTTGAATCATAG
Protein sequence (LotjaGi1g1v0092300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEEVNKPSSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVFLNNNYMKPD PNAPPKRGRGRPPKPKAALPLDTVVAPPRPRGRPPKDPNAEPKPKVVSIASGRPRGRPKKVARSAAAASPGAAVSSGRPR GRPPKVKPQLTEVSVES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 2.2E-78 | – | |
| PANTHER | 1 | 176 | 176 | 2.2E-78 | ||
| Gene3D | 6 | 84 | 79 | 1.6E-9 | ||
| SUPERFAMILY | 8 | 87 | 80 | 5.06E-18 | ||
| SMART | 9 | 75 | 67 | 1.1E-22 | ||
| ProSiteProfiles | 11 | 80 | 70 | 24.807 | ||
| Pfam | 13 | 71 | 59 | 7.7E-9 | ||
| MobiDBLite | 72 | 177 | 106 | - | – | |
| PRINTS | 84 | 96 | 13 | 3.2E-8 | ||
| Pfam | 86 | 94 | 9 | 2.4 | ||
| PRINTS | 86 | 96 | 11 | 4.1E-16 | ||
| SMART | 86 | 98 | 13 | 8.3 | ||
| PRINTS | 106 | 117 | 12 | 4.1E-16 | ||
| PRINTS | 108 | 119 | 12 | 3.2E-8 | ||
| Pfam | 108 | 119 | 12 | 0.11 | ||
| SMART | 108 | 120 | 13 | 0.69 | ||
| PRINTS | 121 | 140 | 20 | 3.2E-8 | ||
| PRINTS | 130 | 140 | 11 | 4.1E-16 | ||
| Pfam | 132 | 142 | 11 | 0.59 | ||
| SMART | 132 | 144 | 13 | 3.1 | ||
| Pfam | 157 | 168 | 12 | 0.3 | ||
| SMART | 157 | 169 | 13 | 1.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. | ||
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0092300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…