Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PR00929

Source: PRINTS

Description

AT-hook-like domain signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 57

Transcript Name Description Predicted domains Domain count
Lj0g3v0062309.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
12
Lj0g3v0062319.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
4
Lj0g3v0073699.1
– Family 2 glycosyl transferase [Myxococcus stipitatus DSM 14675] gi|442322689|ref|YP_007362710.1|
Domains
8
Lj0g3v0093109.1
– Origin recognition complex subunit Orc4 [Schizosaccharomyces pombe 972h]-] gi|19112617|ref|NP_595825.1|
Domains
4
Lj0g3v0093109.2
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
Domains
11
Lj0g3v0217419.1
– HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1|
Domains
17
Lj0g3v0236199.1
– PREDICTED: zinc finger protein 436-like [Cavia porcellus] gi|348570796|ref|XP_003471183.1|
Domains
3
Lj0g3v0259499.1
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
6
Lj0g3v0259499.2
– Transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Domains
6
Lj0g3v0310589.1
– Os07g0180800 [Oryza sativa Japonica Group] gi|297725433|ref|NP_001175080.1|
Domains
13
Lj0g3v0361069.1
– PREDICTED: HMG-Y-related protein A-like [Glycine max] gi|356539824|ref|XP_003538393.1|
Domains
3
Lj1g3v2634040.1
– KLTH0F07568p [Lachancea thermotolerans] gi|255716500|ref|XP_002554531.1|
Domains
3
Lj1g3v3404290.1
– AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1|
Domains
16
Lj2g3v0677970.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
16
Lj2g3v2560000.1
– High mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1|
Domains
17
Lj3g3v0718510.1
– PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1|
Domains
6
Lj3g3v1128980.1
– AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Domains
12
Lj4g3v1399600.1
– PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Maylandia zebra] gi|499027288|ref|XP_004564380.1|
Domains
3
Lj4g3v2644190.1
– ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1|
Domains
9
Lj4g3v2644190.2
– ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1|
Domains
9
Lj4g3v3114650.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
17
Lj6g3v0423840.1
– HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1|
Domains
17
Lj6g3v0755720.1
– PREDICTED: high mobility group protein HMG-I/HMG-Y isoform X2 [Ochotona princeps] gi|504157635|ref|XP_004590339.1|
Domains
3
LotjaGi1g1v0007100_LC.1
– Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P79987|HIRA_CHICK Protein HIRA; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0007100_LC
Domains
4
LotjaGi1g1v0092300.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300
Domains
18
LotjaGi1g1v0161700_LC.1
– Amyloid beta A4 precursor protein-binding family B member 1-interacting protein; TAIR: AT5G39820.1 NAC domain containing protein 94; Swiss-Prot: sp|Q6ZFZ4|DEK1_ORYSJ Calpain-type cysteine protease ADL1; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0161700_LC
Domains
5
LotjaGi1g1v0311000_LC.2
– 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G16950.1 transportin 1; Swiss-Prot: sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0311000_LC
Domains
3
LotjaGi1g1v0569400.1
– AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400
Domains
19
LotjaGi2g1v0138100_LC.1
– High mobility group protein HMGI-C; TAIR: AT5G46200.1 carboxyl-terminal proteinase-like protein (DUF239); Swiss-Prot: sp|Q95QK3|JMJ31_CAEEL Lysine-specific demethylase jmjd-3.1; TrEMBL-Plants: tr|F6HE43|F6HE43_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0138100_LC
Domains
3
LotjaGi2g1v0198500.1
– Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500
Domains
17
LotjaGi3g1v0088400_LC.1
– Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT1G62820.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|A0A072TE97|A0A072TE97_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0088400_LC
Domains
8
LotjaGi3g1v0105100_LC.1
– RNA-binding protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A087SFR6|A0A087SFR6_AUXPR Eukaryotic translation initiation factor 3 subunit G; Found in the gene: LotjaGi3g1v0105100_LC
Domains
15
LotjaGi3g1v0123600_LC.1
– AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123600_LC
Domains
7
LotjaGi3g1v0481300.1
– AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481300
Domains
13
LotjaGi4g1v0078100_LC.1
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.2
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.3
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.4
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.5
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.6
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0078100_LC.7
– Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC
Domains
14
LotjaGi4g1v0147700_LC.1
– HMG-Y-related A; TAIR: AT5G27890.1 hypothetical protein; Swiss-Prot: sp|A6ZMG6|MYO5_YEAS7 Myosin-5; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0147700_LC
Domains
12
LotjaGi4g1v0165500_LC.1
– Auxin response factor; TAIR: AT1G66530.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|P44969|IGA0_HAEIN Immunoglobulin A1 protease autotransporter; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0165500_LC
Domains
3
LotjaGi4g1v0221300_LC.1
– RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|G7IEB7|G7IEB7_MEDTR PHD finger protein, putative; Found in the gene: LotjaGi4g1v0221300_LC
Domains
3
LotjaGi4g1v0325400_LC.1
– Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0325400_LC
Domains
9
LotjaGi4g1v0463300.1
– Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300
Domains
17
LotjaGi5g1v0010800_LC.1
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.12
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|K7LHU1|K7LHU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
11
LotjaGi5g1v0010800_LC.13
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.3
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.7
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
5
LotjaGi5g1v0010800_LC.9
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC
Domains
11
LotjaGi5g1v0058600_LC.1
– Rho guanine nucleotide exchange factor 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q60875|ARHG2_MOUSE Rho guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi5g1v0058600_LC
Domains
4
LotjaGi5g1v0093200.1
– General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|K7LHU1|K7LHU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0093200
Domains
11
LotjaGi6g1v0056500.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0056500
Domains
18
LotjaGi6g1v0056600.1
– HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600
Domains
17
LotjaGi6g1v0077900_LC.1
– RNA-binding protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A087SFR6|A0A087SFR6_AUXPR Eukaryotic translation initiation factor 3 subunit G; Found in the gene: LotjaGi6g1v0077900_LC
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.75