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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0056600 |
| Transcript ID | LotjaGi6g1v0056600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10263277..10265350) extracted from Lotus japonicus Gifu genome v1.2.
CCCACCGTCAGATCATCCCCTCTTCCTTAATTCCTAGCCGTCCATATCTCCCTGATTGAAAACATCAACAGAGGAAAAGA AAGAAGCTTTTTCTGTCTTTTTTTTTTATTTTATATTATTTTTTATTGGATTATTTATTATCTCCCTTCAAATCAGATCC TCAATTTCTTACAGATTCTGCTAAAATAAAGACAGTGGTACTCTGAAAACTGTGTTTGCTCTGGGAATCCGAGGTTGAAA AAGCTTCACACTCTGCAACCAACTTCAATGGCCAACGAAGATGGACAAGTTATTGTGAAACCCTCTTCACTTCCTTCATA CCGTGAGGTAGCTACCCCTCTTTCTAATCCAGTGTTTTATTAATCAATATTTTTTTCCAACCTTCTAGAGAATTTTAGGG TAGATCAACAAAAATAAAAACAAATTTCCCTTTATCTAAATGCTTCTTCACCATGATTAATTTCATGTCTAATTAATTAA TTGTTTATATATAGTTTTCTAGTTTTTTCTGGATATTCTTGCATGCAAATTTCAGAAACATAGGGATATCTAAAATGTTC ACTTAATAATTAAATCTGAAATAAGTTATTAGAAATAATTTTGCTAGGGAAAAAAATATTTTATATTTTTGCTGCAAATT CATGAGGCAAGATAGAATTAAATTTTATTGAAAAAAAAAACAAATTTTGGTTTTAGCTTCATGAGGGCTGAATTTAATAG TGTTGGTATTTTATTTTCAGATGATTTTGAAGGCGATTGATGGTCGGAACGAAGAGAATGGGTCCAACAAAACTTCAATA GCCAAGTACATAGAATCTACATATGGTGAGTTGCTGCCTCCGGGTCACAAGGTCCTGCTCAACGTGCACCTTGCAAAGAT GAGGGACAGTGGGGAGTTAGTGTTTTGGAAAAACAACTACACTAAGCGTGACATTAACGCGCCGCCGCGGCCCCGGGGCC GCGGCAGGCCCCCAAAGCCTAAGGAACAGGGTGCTGTTGTGGAGTCGCCGAGGCCTAGGGGCCGCCCTGCTAAGGACCCG AATGCCCCGCCAAGCTCTCCCAAGGTTAAGGCCTCAGGTGGGAGTGGCAGGCCTAGAGGCCGGCCTAGGAAGACGGCCCA GCCTGGTGAAGCACTTCCGGTCCCAGCTGGGAGTGGGAGGCCCAGAGGTAGACCTCCAAAGATGCAGTGCACATTGACTG AAATTAGTGCTTAACAATAGAACCCTTGTTTTGGGGTTTAGACCTGATGTGGAAATTGAAGTGTTGTTTTCAGAAAAGAG GATAGATTGGATGTGCTGGGTTAGGTTCTGCTCTGTTTGTGTGTTAGACTTTAGATGAGTTGTTAACATGTTATGTACAA TTGTGTAGTGGTAGTTGGCTAGTAGCTGAGCTCTGTGGGTTTGGTTTGTAAATTTTAATTGTTAAACAATGGGGATATGA TCATATGAACCTCATAAATTCTTGATTTGAAGAATCTGTGTGTTCTATTCAATTTGATTTCTGTCTCAATCTTCACTGGG TTGCTTTTATACCTTCATCACACGCACATACCTGAAATGTGTATAGAGTCGCATATTAAACATGTTGGAAATGTTGACAA CTTGACACAATTCTGAAAGGATTAATTTATCCAAGTGGTGAAAACCTGAAGATATAAGCATTTTCAACACCTAGGTGACT AGGACCAGGGTTACATTAGTTGAAAATGACTGCGATACTGTATGATTTTACAGCTTAGTATACCAATTGATTTTACAGTT TAGTATACCAAACTAGTTACAGAATTTTCATGACTTATGTATGTTTTGACAGCCCTCTTTGTCATGGTACTGTTTTTTCT CAATGTGCCATTTTCAATTATGTTTGACACATTTACATCTACTTTTTGCATTACATTTTCACTCTTTTTTTTTTCTAACT CTCTCATTCCTTCATATATTTATTGCAAATTATATAATTGCACTTTTCGTCCTTAATGTATTACTCTTGTGCAATTTTGG TTCCCTTTGTTTAAAAGGAGCAATTTTGGTACAACAAAGATCTGAACGTGACAATTGGGTCCTTTCGTTAGTTC
CDS sequence (LotjaGi6g1v0056600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAACGAAGATGGACAAGTTATTGTGAAACCCTCTTCACTTCCTTCATACCGTGAGATGATTTTGAAGGCGATTGA TGGTCGGAACGAAGAGAATGGGTCCAACAAAACTTCAATAGCCAAGTACATAGAATCTACATATGGTGAGTTGCTGCCTC CGGGTCACAAGGTCCTGCTCAACGTGCACCTTGCAAAGATGAGGGACAGTGGGGAGTTAGTGTTTTGGAAAAACAACTAC ACTAAGCGTGACATTAACGCGCCGCCGCGGCCCCGGGGCCGCGGCAGGCCCCCAAAGCCTAAGGAACAGGGTGCTGTTGT GGAGTCGCCGAGGCCTAGGGGCCGCCCTGCTAAGGACCCGAATGCCCCGCCAAGCTCTCCCAAGGTTAAGGCCTCAGGTG GGAGTGGCAGGCCTAGAGGCCGGCCTAGGAAGACGGCCCAGCCTGGTGAAGCACTTCCGGTCCCAGCTGGGAGTGGGAGG CCCAGAGGTAGACCTCCAAAGATGCAGTGCACATTGACTGAAATTAGTGCTTAA
Protein sequence (LotjaGi6g1v0056600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANEDGQVIVKPSSLPSYREMILKAIDGRNEENGSNKTSIAKYIESTYGELLPPGHKVLLNVHLAKMRDSGELVFWKNNY TKRDINAPPRPRGRGRPPKPKEQGAVVESPRPRGRPAKDPNAPPSSPKVKASGGSGRPRGRPRKTAQPGEALPVPAGSGR PRGRPPKMQCTLTEISA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 177 | 173 | 1.5E-75 | – | |
| PANTHER | 5 | 177 | 173 | 1.5E-75 | – | |
| Gene3D | 10 | 91 | 82 | 4.2E-10 | ||
| SUPERFAMILY | 11 | 92 | 82 | 4.68E-17 | ||
| SMART | 12 | 79 | 68 | 1.5E-18 | ||
| ProSiteProfiles | 14 | 84 | 71 | 21.651 | ||
| Pfam | 16 | 77 | 62 | 1.1E-9 | ||
| MobiDBLite | 76 | 177 | 102 | - | – | |
| MobiDBLite | 87 | 115 | 29 | - | – | |
| PRINTS | 89 | 101 | 13 | 1.9E-9 | ||
| PRINTS | 91 | 101 | 11 | 1.1E-13 | ||
| SMART | 91 | 103 | 13 | 5.8 | ||
| Pfam | 91 | 99 | 9 | 1.4 | ||
| PRINTS | 108 | 119 | 12 | 1.1E-13 | ||
| Pfam | 110 | 121 | 12 | 0.094 | ||
| SMART | 110 | 122 | 13 | 0.76 | ||
| PRINTS | 112 | 123 | 12 | 1.9E-9 | ||
| PRINTS | 125 | 144 | 20 | 1.9E-9 | ||
| PRINTS | 134 | 144 | 11 | 1.1E-13 | ||
| SMART | 136 | 148 | 13 | 1.5 | ||
| Pfam | 136 | 147 | 12 | 0.1 | ||
| SMART | 159 | 171 | 13 | 1.7 | ||
| Pfam | 159 | 168 | 10 | 0.11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. | ||
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi6g1v0056600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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