Domain Predictions — View

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PF06480

Source: Pfam

Description

FtsH Extracellular

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004222 View details of GO:0004222 AmiGO InterPro QuickGO	Molecular function	Metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.	Subterm of GO:0004175 GO:0008237
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of GO:0046914
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v3213280.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AAA-metalloprotease FtsH [Pisum sativum] gi\|15021761\|gb\|AAK77908.1\|AF397903_1	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PS00674 PTHR23076 PTHR23076:SF69 SM00382 SSF140990 SSF52540 TIGR01241 TRANSMEMBRANE cd00009 mobidb-lite	25
Lj3g3v3213280.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X1 [Cicer arietinum] gi\|502148467\|ref\|XP_004507174.1\|	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PS00674 PTHR23076 PTHR23076:SF69 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00382 SSF140990 SSF52540 SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TIGR01241 cd00009	28
LotjaGi2g1v0059700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G02450.1 cell division protein ftsH; Swiss-Prot: sp\|Q9M895\|FTSI3_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic; TrEMBL-Plants: tr\|I1N6J7\|I1N6J7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0059700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR003960 IPR011546 IPR027417 IPR041569 NON_CYTOPLASMIC_DOMAIN PF00004 PF06480 PF17862 PS00674 PTHR23076 PTHR23076:SF110 SM00382 SSF52540 TRANSMEMBRANE cd00009	20
LotjaGi2g1v0375900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|A0A1J7GZI6\|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SM00382 SSF140990 SSF52540 TIGR01241 TMhelix TRANSMEMBRANE cd00009 mobidb-lite	31
LotjaGi2g1v0375900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|A0A1J7GZI6\|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SM00382 SSF140990 SSF52540 TIGR01241 TMhelix TRANSMEMBRANE cd00009 mobidb-lite	31
LotjaGi2g1v0375900.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|A0A1J7GZI6\|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SM00382 SSF140990 SSF52540 TIGR01241 TMhelix TRANSMEMBRANE cd00009 mobidb-lite	31
LotjaGi2g1v0376100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|Q94ES0\|Q94ES0_PEA AAA-metalloprotease FtsH; Found in the gene: LotjaGi2g1v0376100	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SM00382 SSF140990 SSF52540 TIGR01241 TRANSMEMBRANE cd00009 mobidb-lite	30
LotjaGi2g1v0376100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|A0A1J7GZI6\|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0376100	Domains G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00382 SSF140990 SSF52540 SignalP-noTM TIGR01241 cd00009	32
LotjaGi2g1v0376100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp\|Q8VZI8\|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial; TrEMBL-Plants: tr\|A0A1J7GZI6\|A0A1J7GZI6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0376100	Domains G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.1690.20 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR43655 PTHR43655:SF24 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00382 SSF140990 SSF52540 SignalP-noTM TIGR01241 cd00009	32
LotjaGi6g1v0132900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G58870.1 FTSH protease 9; Swiss-Prot: sp\|Q9FIM2\|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic; TrEMBL-Plants: tr\|A0A068FWX3\|A0A068FWX3_CICAR Metalloprotease; Found in the gene: LotjaGi6g1v0132900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.8.60 G3DSA:1.20.58.760 G3DSA:3.40.50.300 IPR000642 IPR003593 IPR003959 IPR003960 IPR005936 IPR011546 IPR027417 IPR037219 IPR041569 MF_01458 NON_CYTOPLASMIC_DOMAIN PF00004 PF01434 PF06480 PF17862 PS00674 PTHR23076 PTHR23076:SF102 SM00382 SSF140990 SSF52540 TIGR01241 TRANSMEMBRANE cd00009 mobidb-lite	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00