Domain Predictions — View

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PF16004

Source: Pfam

Description

116 kDa U5 small nuclear ribonucleoprotein component N-terminus

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v1971930.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi\|502151359\|ref\|XP_004508402.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.30.230.10 G3DSA:3.30.70.240 G3DSA:3.30.70.870 G3DSA:3.40.50.300 G3DSA:3.90.1430.10 IPR000640 IPR000795 IPR004161 IPR005225 IPR005517 IPR009000 IPR009022 IPR014721 IPR020568 IPR027417 IPR031950 PF00009 PF00679 PF03144 PF03764 PF16004 PR00315 PS51722 PTHR23115 PTHR23115:SF5 SM00838 SM00889 SSF50447 SSF52540 SSF54211 SSF54980 TIGR00231 cd01683 cd04090 cd04098 cd04167 mobidb-lite	38
LotjaGi4g1v0282200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor like protein; TAIR: AT1G06220.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp\|Q9LNC5\|CLO_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO; TrEMBL-Plants: tr\|G7JHS5\|G7JHS5_MEDTR Elongation factor EF-Tu-like protein; Found in the gene: LotjaGi4g1v0282200	Domains G3DSA:2.40.30.10 G3DSA:3.30.230.10 G3DSA:3.30.70.240 G3DSA:3.30.70.870 G3DSA:3.40.50.300 G3DSA:3.90.1430.10 IPR000640 IPR000795 IPR004161 IPR005225 IPR005517 IPR009000 IPR014721 IPR020568 IPR027417 IPR031950 IPR035647 IPR035655 PF00009 PF00679 PF03144 PF03764 PF16004 PR00315 PS51722 PTHR42908 PTHR42908:SF6 SM00838 SM00889 SSF50447 SSF52540 SSF54211 SSF54980 TIGR00231 cd01683 cd04090 cd04098 cd04167 cd16264 mobidb-lite	40
LotjaGi4g1v0282200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor like protein; TAIR: AT1G06220.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp\|Q9LNC5\|CLO_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO; TrEMBL-Plants: tr\|V7CCM3\|V7CCM3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282200	Domains G3DSA:2.40.30.10 G3DSA:3.30.230.10 G3DSA:3.30.70.240 G3DSA:3.30.70.870 G3DSA:3.40.50.300 G3DSA:3.90.1430.10 IPR000640 IPR000795 IPR004161 IPR005225 IPR005517 IPR009000 IPR014721 IPR020568 IPR027417 IPR031950 IPR035647 IPR035655 PF00009 PF00679 PF03144 PF03764 PF16004 PR00315 PS51722 PTHR42908 PTHR42908:SF6 SM00838 SM00889 SSF50447 SSF52540 SSF54211 SSF54980 TIGR00231 cd01683 cd04090 cd04098 cd04167 cd16264	39

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16264	CDD	1	33.33