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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0282200 |
| Transcript ID | LotjaGi4g1v0282200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor like protein; TAIR: AT1G06220.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9LNC5|CLO_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO; TrEMBL-Plants: tr|V7CCM3|V7CCM3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65339181..65343931) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGATAGCTTGTACGACGAGTTCGGCAACTACATCGGACCCGAAATCGAGTCCGACCAAGACTCCGACAGAGAACC TTCCGACGACGAACAGCCTTCCGACGCCGACACCGCCCAACCTTCCGACGGCGAGGCTCCCGCCACCAATGGCTGGATCA CCGCATCCGGCGACCCCAACGACGTCGACATGGTCGACAACCAGGTGGTCCTGGCGGAGGACAAGAAGTACTACCCCACC GCCGAAGAAGTCTTCGGCGAAGATGTGGAAACCCTAGTCATGGATGAAGATGAACAGCCACTGGAGCAACCCATTATCAA GCCTGTGAGGAAGATGAAGTTCGAGGTTGGCGTGAAGGATTCGTCAACCTACGTTTCGTCACAATTTCTTCTGGGTCTCA TGTCGAACCCTTCGTTGGCTAGGAATGTGGCTCTTGTGGGGCACTTGCAGCATGGGAAGACGGTGTTCATGGATATGCTG GTGGAGCAGACTCACCATATGTCCACGTTTGATTCACAGAGTGAGAAGCATTTGCGGTATACTGATACGAGGATTGATGA ACAGGAGAGGAGGATTTCGATCAAGGCTGTGCCCATGACGATGGTGCTGGAGGATAGTAACTCCAAGTCGTATTTGTGTA ATATTATGGATACTCCTGGCCATGTTAACTTCTCCGATGAAATGACCGCCGCTTTGAGGCTCGCTGATGGTGCTGTTTTG GTCGTTGATGCTGCTGAGGGAGTGATGGTAACCCTTTTTCTTCTTCCCATTCCCTTGTTAATTAGTGCTGTTGATCCATT TTGATGTTTAGACTTTTGGGTGTTGGTCAATTTCAGCTGAGAGTAAATTGCATTTCCAAATCTATATAGGCATATAGAGG GAAAAAAAGACGTAGAAGATGTCATTAGAAAGGAAAAGGGTAAGGTGTGTATAAAAATTGGCTTGGGAAAAGGGTTAAAA TCAGGGTTTGAATAACAATTAGTATGCTCTATCATTTTTCAAACTTATACGAAGACTATGATCTATTTGTTAGGTTATTA TACCAGAAGTAATAATAATGTTACAGAATTGTGACATACAAAAAAACTACGTTAAAAAGTATAATTACGTGGGTGAACCA TAAATTAGGGATAGAAATCAGCTAACTAGACCGATCATATAATATGGAGCTTACAATGTTTATTCATCTAATTGCGTTCA ATGCTGATTTACCTAGTATCAGTTACAATGACATAACTGCATAACGTTGAGCTTTTAGTTCTTGGGATTTGTAGGTAAAC ACTGAGAGAGCAATTCGCCATGCGATTCAGGAGCGACTGCCCATTGTTGTTGTACTCAATAAGGTACACTAATTCTTCCT TAACATGAATGTCAGCTGTAGGTCTTAGTCTTACATATACTCCTGTTTTATTCCTAGTTGTTAAGTGTTGTGTTTTTAGG TTGACAGGATCATAACTGAACTTAAACTACCCCCAAAAGATGCTTATCATAAAATAAGGCATACTTTGGAAGTCATTAAC ACTCACATATCTGCTGCCTCCTCGACTGCGGGTGATGTCCAAGTTATAGATCCAGTTGCTGGGAATGTTTGTTTTGCAAG TGGCACTGCTGGGTGGTCTTTTACATTGCAATCATTTGCTAAATTGTATGGGAAGCTACATGGAGTTCCTTTGGAGCCTA ATAAATTTGCTTCTCGCCTTTGGGGAGACTACTATTTTCATCCTGATACCAGAACCTTCAAAAAGAAACCCCCTGTCAGT GGAGGAGAACGATCTTTTGTTGAGTTTGTACTGGAGCCGCTTTACAAGATATATAGCCAAGTAATTGGGGAGCATAAGAA AAGTGTGGAGACAACTCTAGCAGAACTTGGAGTTACTCTAAGTAATGCAGCTTATAGATTAAATGTTAGACCATTGCTAA GGCTGGCTTGTAGCTCTGTTTTTGGTCAAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCGAGAGAT GCCGCAGTAAAGAAAGTTGATCATATATATACCGGACTGAAAGACTCATCCATCTACAAAGCCATGACACAGTGTGATTC TTCAGGGCCCCTAATGGTTAATGTGACCAAGCTGTATCCAAAGTCTGATTGTAGTGTCTTTGATGCTTTTGGTCGAGTTT ATAGTGGCAAGATACAGACTGGACAGACAGTACGTGTTCTGGGAGAAGGATACTCACCGGATGATGAGGAGGACATGACT GTAAAAGAAGTAACTAAGTTGTGGGTATATCAAGCCCGTGATAGGATGCCAATATCGGAGGCTCCTCCAGGTTCTTGGGT TCTTATTGAAGGTGTGGATGCTTCAATCATGAAAACCGCCACTCTATGTAATGTCGATTATGATGAGGATGTATACATAT TCCGCCCTCTCCTGTTCAATACTCTGTCAGTGGTGAAAACAGCGACTGAGCCATTAAATCCAAGCGAGTTGCCTAAAATG GTGGAGGGCCTGAGGAAAATTAGCAAGAGTTATCCTTTAGCGGTTACTAAAGTTGAGGAGTCTGGGGAGCACACTATACT AGGGACTGGCGAGCTGTACTTGGATTCAATTATGAAGGACCTAAGAGAGCTCTATTCTGAAGTCGAAGTCAAGGTCTTAT ATTATTTCCCTTTTCCCTTCTCAGTTCTCCTGTCATGGATTTTCATTCCCTTTTTGGGCTAGACATTGACTTATAAGCTG TTCCTTTATTGAAGATTATCCTTTACTCTGTATTTGTAGGTAGCAGATCCTGTAGTTTCGTTTTGTGAAACTGTTGTTGA ATCTTCATCAATGAAATGTTTTGCTGAAACACCAAACAAGAAGAATAAAATAACAATGGTAGGTGTCTTCCTGTCTATCT TATTGTGGAGGCTTCTTGAAGTATAATATGCAGCTTAAGAATACTTTTATTTTACTGAGACTGATTTATTGTTCATTTCA TTCATGATAACCTTGCTCATTCTTTAGATTGCTGAGCCACTAGAAAGAGGTCTTGCTGAAGACATAGAGAATGGTGTTGT TAGCACTGACTGGAATAGAAAGAAACTGGGTGAATTTTTCCAGACTAAATATGACTGGGATCTTCTTGCTGCGCGATCAA TCTGGGCATTTGGCCCTGATAAGCAGGTAAGTCTCTGTATCTGTCTATTGCTCTGTCTGTCTCCTGGAATTTGTGTGTAA CATATTCAAGGATAATGCAGGGCCCCAATATTCTGTTGGACGACACCCTTCCAACTGAAGTTGACAAGAACCTGCTAAAT GCTGTTAAGGACTCCATTGTTCAGGGGTAGGCATACAATACATTGAACTATTTAGATGTGTTGATCAATTAATCGTATAT TGTAAATTTTATTTTATTTTTGTTATTTAACAGATTTCAATGGGGTGCACGAGAAGGACCTCTTTGCGATGAGCCCATCA GAAATGTTAAGTTTAAGATTGTTGATGCAAGGATTGCCCCAGAGCCACTTAATCGGGGATCTGGCCAAATCATTCCAACT GCTCGACGAGTGGCTTATTCATCTTTCCTTATGGCTACCCCTAGGTTAATGGAACCAGTATATTATGTAGAGGTATATTC TTGTTATTTTATACTTCATTTATGGCTGCGTATCAAATTTGGTTGTAATCATTGTGGTTTCTGACATTTTAACTCATTGA TTATTACATATTGTCAGAAAGATCTGCATTCAAGCTGTTTAGCAGAGCATGTTCACCATTTTAATTTAAAAGCATGGCTA ATTAAGTATGGCCAGAATAATATAATTTACAGAAGCTAGCAAAATCATTCTTATATTTACACTAATTCTAGATTGAATTT TGAGACCAATAATTTTACTATTTCACTGATACTTGCTATGATGGCAATGTTATTCTACTGGCCTTTGCATCAGATTCAAA CTCCAATAGATTGTGTATCTGCGATCTACACTGTATTGTCTCGTAGGCGTGGACATGTTACTGCTGATGTTCCTCAACCA GGCACCCCTGCTTATTTAGTTAAGGTTAGTACCTAACCTTGGCTTTGTAATCTGTTTAATGGGTTGCTTCGTTAGACTGC TATGGTTTTGAGGATGTTCTGAGTATCAGGTTGAGTTTCTCTGTTTGAATCAAAAACTTGGTTTACTGACTTTGTCCCCC CCATCTTTCAGGCATTTTTACCCGTGATAGAATCTTTTGGTTTTGAGACTGACTTGAGATACCATACACAAGGTCAAGCA TTTTGCGTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGTGATCCTTTGGACAAAGGCATTGTTTTGCGTCCCCTTGA ACCGGCACCAATCCAGCATCTTGCCCGTGAGTTTATGGTAAAGACAAGGCGTAGAAAGGTATATGCTCTTCCTCCTTCAT ATAATTGCGCTCTTTTTTTTAATTTATATTTTTTCTCGGAGGTGTTATGTTTAATGATATTATATTCCACATTTATGCTG TCACCTTTGTAACTGCTGATTTATTTATCCTTTTATGAGAAAGGTAAAGAAAATGAAAATATTTGCAAGTAGAAGACATG GTCATGCAAAGTATATTTGTGAAATATCTGGTGGGAAGAGCATATATTCTAACTGGCTACTGCAAAGCATTTAATACATG TTGCTCTTGCAGGGAATGAGTGAGGATGTGAGCATAAGTAAGTTCTTTGATGAGGCTATGATGGTGGAACTGGCACAGCA AGAGGCAGATCTTCATCAACAGATGATGTGA
CDS sequence (LotjaGi4g1v0282200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGACAACCAGGTGGTCCTGGCGGAGGACAAGAAGTACTACCCCACCGCCGAAGAAGTCTTCGGCGAAGATGTGGA AACCCTAGTCATGGATGAAGATGAACAGCCACTGGAGCAACCCATTATCAAGCCTGTGAGGAAGATGAAGTTCGAGGTTG GCGTGAAGGATTCGTCAACCTACGTTTCGTCACAATTTCTTCTGGGTCTCATGTCGAACCCTTCGTTGGCTAGGAATGTG GCTCTTGTGGGGCACTTGCAGCATGGGAAGACGGTGTTCATGGATATGCTGGTGGAGCAGACTCACCATATGTCCACGTT TGATTCACAGAGTGAGAAGCATTTGCGGTATACTGATACGAGGATTGATGAACAGGAGAGGAGGATTTCGATCAAGGCTG TGCCCATGACGATGGTGCTGGAGGATAGTAACTCCAAGTCGTATTTGTGTAATATTATGGATACTCCTGGCCATGTTAAC TTCTCCGATGAAATGACCGCCGCTTTGAGGCTCGCTGATGGTGCTGTTTTGGTCGTTGATGCTGCTGAGGGAGTGATGGT AAACACTGAGAGAGCAATTCGCCATGCGATTCAGGAGCGACTGCCCATTGTTGTTGTACTCAATAAGGTTGACAGGATCA TAACTGAACTTAAACTACCCCCAAAAGATGCTTATCATAAAATAAGGCATACTTTGGAAGTCATTAACACTCACATATCT GCTGCCTCCTCGACTGCGGGTGATGTCCAAGTTATAGATCCAGTTGCTGGGAATGTTTGTTTTGCAAGTGGCACTGCTGG GTGGTCTTTTACATTGCAATCATTTGCTAAATTGTATGGGAAGCTACATGGAGTTCCTTTGGAGCCTAATAAATTTGCTT CTCGCCTTTGGGGAGACTACTATTTTCATCCTGATACCAGAACCTTCAAAAAGAAACCCCCTGTCAGTGGAGGAGAACGA TCTTTTGTTGAGTTTGTACTGGAGCCGCTTTACAAGATATATAGCCAAGTAATTGGGGAGCATAAGAAAAGTGTGGAGAC AACTCTAGCAGAACTTGGAGTTACTCTAAGTAATGCAGCTTATAGATTAAATGTTAGACCATTGCTAAGGCTGGCTTGTA GCTCTGTTTTTGGTCAAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCGAGAGATGCCGCAGTAAAG AAAGTTGATCATATATATACCGGACTGAAAGACTCATCCATCTACAAAGCCATGACACAGTGTGATTCTTCAGGGCCCCT AATGGTTAATGTGACCAAGCTGTATCCAAAGTCTGATTGTAGTGTCTTTGATGCTTTTGGTCGAGTTTATAGTGGCAAGA TACAGACTGGACAGACAGTACGTGTTCTGGGAGAAGGATACTCACCGGATGATGAGGAGGACATGACTGTAAAAGAAGTA ACTAAGTTGTGGGTATATCAAGCCCGTGATAGGATGCCAATATCGGAGGCTCCTCCAGGTTCTTGGGTTCTTATTGAAGG TGTGGATGCTTCAATCATGAAAACCGCCACTCTATGTAATGTCGATTATGATGAGGATGTATACATATTCCGCCCTCTCC TGTTCAATACTCTGTCAGTGGTGAAAACAGCGACTGAGCCATTAAATCCAAGCGAGTTGCCTAAAATGGTGGAGGGCCTG AGGAAAATTAGCAAGAGTTATCCTTTAGCGGTTACTAAAGTTGAGGAGTCTGGGGAGCACACTATACTAGGGACTGGCGA GCTGTACTTGGATTCAATTATGAAGGACCTAAGAGAGCTCTATTCTGAAGTCGAAGTCAAGGTAGCAGATCCTGTAGTTT CGTTTTGTGAAACTGTTGTTGAATCTTCATCAATGAAATGTTTTGCTGAAACACCAAACAAGAAGAATAAAATAACAATG ATTGCTGAGCCACTAGAAAGAGGTCTTGCTGAAGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACT GGGTGAATTTTTCCAGACTAAATATGACTGGGATCTTCTTGCTGCGCGATCAATCTGGGCATTTGGCCCTGATAAGCAGG GCCCCAATATTCTGTTGGACGACACCCTTCCAACTGAAGTTGACAAGAACCTGCTAAATGCTGTTAAGGACTCCATTGTT CAGGGATTTCAATGGGGTGCACGAGAAGGACCTCTTTGCGATGAGCCCATCAGAAATGTTAAGTTTAAGATTGTTGATGC AAGGATTGCCCCAGAGCCACTTAATCGGGGATCTGGCCAAATCATTCCAACTGCTCGACGAGTGGCTTATTCATCTTTCC TTATGGCTACCCCTAGGTTAATGGAACCAGTATATTATGTAGAGATTCAAACTCCAATAGATTGTGTATCTGCGATCTAC ACTGTATTGTCTCGTAGGCGTGGACATGTTACTGCTGATGTTCCTCAACCAGGCACCCCTGCTTATTTAGTTAAGGCATT TTTACCCGTGATAGAATCTTTTGGTTTTGAGACTGACTTGAGATACCATACACAAGGTCAAGCATTTTGCGTCTCAGTTT TTGATCATTGGGCTATTGTTCCTGGTGATCCTTTGGACAAAGGCATTGTTTTGCGTCCCCTTGAACCGGCACCAATCCAG CATCTTGCCCGTGAGTTTATGGTAAAGACAAGGCGTAGAAAGGGAATGAGTGAGGATGTGAGCATAAGTAAGTTCTTTGA TGAGGCTATGATGGTGGAACTGGCACAGCAAGAGGCAGATCTTCATCAACAGATGATGTGA
Protein sequence (LotjaGi4g1v0282200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDNQVVLAEDKKYYPTAEEVFGEDVETLVMDEDEQPLEQPIIKPVRKMKFEVGVKDSSTYVSSQFLLGLMSNPSLARNV ALVGHLQHGKTVFMDMLVEQTHHMSTFDSQSEKHLRYTDTRIDEQERRISIKAVPMTMVLEDSNSKSYLCNIMDTPGHVN FSDEMTAALRLADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVLNKVDRIITELKLPPKDAYHKIRHTLEVINTHIS AASSTAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKLYGKLHGVPLEPNKFASRLWGDYYFHPDTRTFKKKPPVSGGER SFVEFVLEPLYKIYSQVIGEHKKSVETTLAELGVTLSNAAYRLNVRPLLRLACSSVFGQASGFTDMLVQHIPSPRDAAVK KVDHIYTGLKDSSIYKAMTQCDSSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPDDEEDMTVKEV TKLWVYQARDRMPISEAPPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGL RKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITM IAEPLERGLAEDIENGVVSTDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDSIV QGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLNRGSGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQTPIDCVSAIY TVLSRRRGHVTADVPQPGTPAYLVKAFLPVIESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKGIVLRPLEPAPIQ HLAREFMVKTRRRKGMSEDVSISKFFDEAMMVELAQQEADLHQQMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 3 | 57 | 55 | 2.7E-22 | ||
| PANTHER | 28 | 918 | 891 | 0.0 | – | |
| PANTHER | 28 | 918 | 891 | 0.0 | – | |
| SUPERFAMILY | 63 | 392 | 330 | 7.53E-82 | ||
| Gene3D | 71 | 393 | 323 | 4.2E-170 | – | |
| ProSiteProfiles | 75 | 283 | 209 | 36.735 | ||
| Pfam | 77 | 392 | 316 | 2.4E-49 | ||
| CDD | 78 | 280 | 203 | 1.26449E-109 | – | |
| TIGRFAM | 78 | 218 | 141 | 1.2E-15 | ||
| PRINTS | 79 | 92 | 14 | 6.1E-10 | ||
| Gene3D | 112 | 519 | 408 | 4.2E-170 | – | |
| PRINTS | 151 | 161 | 11 | 6.1E-10 | ||
| PRINTS | 167 | 178 | 12 | 6.1E-10 | ||
| PRINTS | 203 | 212 | 10 | 6.1E-10 | ||
| Gene3D | 272 | 377 | 106 | 4.2E-170 | – | |
| SUPERFAMILY | 393 | 523 | 131 | 8.97E-36 | ||
| CDD | 427 | 520 | 94 | 8.19039E-47 | – | |
| Pfam | 445 | 519 | 75 | 4.2E-11 | ||
| Gene3D | 538 | 614 | 77 | 1.2E-25 | – | |
| SUPERFAMILY | 539 | 611 | 73 | 6.12E-15 | ||
| CDD | 539 | 610 | 72 | 3.36762E-37 | – | |
| CDD | 610 | 787 | 178 | 5.17151E-124 | – | |
| SUPERFAMILY | 613 | 781 | 169 | 5.06E-57 | ||
| Gene3D | 617 | 896 | 280 | 6.4E-119 | – | |
| Gene3D | 622 | 899 | 278 | 6.4E-119 | ||
| SMART | 656 | 777 | 122 | 8.7E-19 | ||
| Pfam | 662 | 776 | 115 | 1.6E-22 | ||
| SMART | 779 | 868 | 90 | 1.4E-19 | ||
| Pfam | 779 | 867 | 89 | 4.2E-22 | ||
| SUPERFAMILY | 782 | 868 | 87 | 8.15E-27 | ||
| CDD | 782 | 861 | 80 | 7.64061E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0282200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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