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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1971930 |
| Transcript ID | Lj4g3v1971930.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | – | – | |
| Pfam | 3 | 120 | 118 | 3.70E-35 | ||
| PANTHER | 123 | 333 | 211 | 0 | – | |
| PANTHER | 123 | 333 | 211 | 0 | – | |
| SUPERFAMILY | 126 | 455 | 330 | 7.95E-82 | ||
| Gene3D | 133 | 333 | 201 | 3.10E-56 | ||
| ProSiteProfiles | 138 | 346 | 209 | 36.735 | ||
| Pfam | 140 | 455 | 316 | 2.30E-49 | – | |
| TIGRFAM | 141 | 281 | 141 | 1.30E-15 | ||
| CDD | 141 | 343 | 203 | 1.66E-108 | – | |
| PRINTS | 142 | 155 | 14 | 7.00E-10 | ||
| PRINTS | 214 | 224 | 11 | 7.00E-10 | ||
| PRINTS | 230 | 241 | 12 | 7.00E-10 | ||
| PRINTS | 266 | 275 | 10 | 7.00E-10 | ||
| Gene3D | 335 | 439 | 105 | 1.50E-28 | – | |
| PANTHER | 358 | 364 | 7 | 0 | – | |
| PANTHER | 358 | 364 | 7 | 0 | – | |
| PANTHER | 445 | 457 | 13 | 0 | – | |
| PANTHER | 445 | 457 | 13 | 0 | – | |
| Gene3D | 451 | 598 | 148 | 1.10E-45 | – | |
| SUPERFAMILY | 456 | 586 | 131 | 1.88E-36 | ||
| PANTHER | 483 | 802 | 320 | 0 | – | |
| PANTHER | 483 | 802 | 320 | 0 | – | |
| CDD | 490 | 583 | 94 | 7.45E-45 | – | |
| Pfam | 508 | 582 | 75 | 3.00E-11 | ||
| SUPERFAMILY | 602 | 674 | 73 | 6.47E-15 | ||
| Gene3D | 602 | 675 | 74 | 3.80E-16 | – | |
| CDD | 673 | 850 | 178 | 1.41E-121 | – | |
| SUPERFAMILY | 676 | 844 | 169 | 6.57E-57 | ||
| Gene3D | 686 | 844 | 159 | 1.90E-71 | ||
| SMART | 719 | 840 | 122 | 8.70E-19 | ||
| Pfam | 725 | 839 | 115 | 7.90E-23 | ||
| SMART | 842 | 931 | 90 | 9.70E-20 | ||
| Pfam | 842 | 930 | 89 | 6.60E-22 | ||
| Gene3D | 845 | 958 | 114 | 3.90E-37 | ||
| CDD | 845 | 924 | 80 | 5.69E-49 | – | |
| SUPERFAMILY | 845 | 931 | 87 | 1.25E-26 | ||
| PANTHER | 850 | 935 | 86 | 0 | – | |
| PANTHER | 850 | 935 | 86 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of Lj4g3v1971930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1971930.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.