Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0282200.1

Overview

Field Value
Gene ID LotjaGi4g1v0282200
Transcript ID LotjaGi4g1v0282200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Elongation factor like protein; TAIR: AT1G06220.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9LNC5|CLO_ARATH 110 kDa U5 small nuclear ribonucleoprotein component CLO; TrEMBL-Plants: tr|G7JHS5|G7JHS5_MEDTR Elongation factor EF-Tu-like protein; Found in the gene: LotjaGi4g1v0282200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:65338422..65344085) extracted from Lotus japonicus Gifu genome v1.2.

CTCAGCCTAGCCCAGCCCACTCTCCTGCAATTCCCATCTTCCATTCCCTCTACTCACTTCTCTTCTTACCCTAAACCCAA AAAAACCCCTTCTTCTCTGAAGCTCACACTCTACACCACACTCAACTCTCTCCAATCTCACTGCATCTTCCAAAATGGAC GATAGCTTGTACGACGAGTTCGGCAACTACATCGGACCCGAAATCGAGTCCGACCAAGACTCCGACAGAGAACCTTCCGA CGACGAACAGCCTTCCGACGCCGACACCGCCCAACCTTCCGACGGCGAGGCTCCCGCCACCAATGGCTGGATCACCGCAT CCGGCGACCCCAACGACGTCGACATGGTCGACAACCAGGTGGTCCTGGCGGAGGACAAGAAGTACTACCCCACCGCCGAA GAAGTCTTCGGCGAAGATGTGGAAACCCTAGTCATGGATGAAGATGAACAGCCACTGGAGCAACCCATTATCAAGCCTGT GAGGAAGATGAAGTTCGAGGTTGGCGTGAAGGATTCGTCAACCTACGTTTCGTCACAATTTCTTCTGGGTCTCATGTCGA ACCCTTCGTTGGCTAGGAATGTGGCTCTTGTGGGGCACTTGCAGCATGGGAAGACGGTGTTCATGGATATGCTGGTGGAG CAGACTCACCATATGTCCACGTTTGATTCACAGAGTGAGAAGCATTTGCGGTATACTGATACGAGGATTGATGAACAGGA GAGGAGGATTTCGATCAAGGCTGTGCCCATGACGATGGTGCTGGAGGATAGTAACTCCAAGTCGTATTTGTGTAATATTA TGGATACTCCTGGCCATGTTAACTTCTCCGATGAAATGACCGCCGCTTTGAGGCTCGCTGATGGTGCTGTTTTGGTCGTT GATGCTGCTGAGGGAGTGATGGTAACCCTTTTTCTTCTTCCCATTCCCTTGTTAATTAGTGCTGTTGATCCATTTTGATG TTTAGACTTTTGGGTGTTGGTCAATTTCAGCTGAGAGTAAATTGCATTTCCAAATCTATATAGGCATATAGAGGGAAAAA AAGACGTAGAAGATGTCATTAGAAAGGAAAAGGGTAAGGTGTGTATAAAAATTGGCTTGGGAAAAGGGTTAAAATCAGGG TTTGAATAACAATTAGTATGCTCTATCATTTTTCAAACTTATACGAAGACTATGATCTATTTGTTAGGTTATTATACCAG AAGTAATAATAATGTTACAGAATTGTGACATACAAAAAAACTACGTTAAAAAGTATAATTACGTGGGTGAACCATAAATT AGGGATAGAAATCAGCTAACTAGACCGATCATATAATATGGAGCTTACAATGTTTATTCATCTAATTGCGTTCAATGCTG ATTTACCTAGTATCAGTTACAATGACATAACTGCATAACGTTGAGCTTTTAGTTCTTGGGATTTGTAGGTAAACACTGAG AGAGCAATTCGCCATGCGATTCAGGAGCGACTGCCCATTGTTGTTGTACTCAATAAGGTACACTAATTCTTCCTTAACAT GAATGTCAGCTGTAGGTCTTAGTCTTACATATACTCCTGTTTTATTCCTAGTTGTTAAGTGTTGTGTTTTTAGGTTGACA GGATCATAACTGAACTTAAACTACCCCCAAAAGATGCTTATCATAAAATAAGGCATACTTTGGAAGTCATTAACACTCAC ATATCTGCTGCCTCCTCGACTGCGGGTGATGTCCAAGTTATAGATCCAGTTGCTGGGAATGTTTGTTTTGCAAGTGGCAC TGCTGGGTGGTCTTTTACATTGCAATCATTTGCTAAATTGTATGGGAAGCTACATGGAGTTCCTTTGGAGCCTAATAAAT TTGCTTCTCGCCTTTGGGGAGACTACTATTTTCATCCTGATACCAGAACCTTCAAAAAGAAACCCCCTGTCAGTGGAGGA GAACGATCTTTTGTTGAGTTTGTACTGGAGCCGCTTTACAAGATATATAGCCAAGTAATTGGGGAGCATAAGAAAAGTGT GGAGACAACTCTAGCAGAACTTGGAGTTACTCTAAGTAATGCAGCTTATAGATTAAATGTTAGACCATTGCTAAGGCTGG CTTGTAGCTCTGTTTTTGGTCAAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCGAGAGATGCCGCA GTAAAGAAAGTTGATCATATATATACCGGACTGAAAGACTCATCCATCTACAAAGCCATGACACAGTGTGATTCTTCAGG GCCCCTAATGGTTAATGTGACCAAGCTGTATCCAAAGTCTGATTGTAGTGTCTTTGATGCTTTTGGTCGAGTTTATAGTG GCAAGATACAGACTGGACAGACAGTACGTGTTCTGGGAGAAGGATACTCACCGGATGATGAGGAGGACATGACTGTAAAA GAAGTAACTAAGTTGTGGGTATATCAAGCCCGTGATAGGATGCCAATATCGGAGGCTCCTCCAGGTTCTTGGGTTCTTAT TGAAGGTGTGGATGCTTCAATCATGAAAACCGCCACTCTATGTAATGTCGATTATGATGAGGATGTATACATATTCCGCC CTCTCCTGTTCAATACTCTGTCAGTGGTGAAAACAGCGACTGAGCCATTAAATCCAAGCGAGTTGCCTAAAATGGTGGAG GGCCTGAGGAAAATTAGCAAGAGTTATCCTTTAGCGGTTACTAAAGTTGAGGAGTCTGGGGAGCACACTATACTAGGGAC TGGCGAGCTGTACTTGGATTCAATTATGAAGGACCTAAGAGAGCTCTATTCTGAAGTCGAAGTCAAGGTCTTATATTATT TCCCTTTTCCCTTCTCAGTTCTCCTGTCATGGATTTTCATTCCCTTTTTGGGCTAGACATTGACTTATAAGCTGTTCCTT TATTGAAGATTATCCTTTACTCTGTATTTGTAGGTAGCAGATCCTGTAGTTTCGTTTTGTGAAACTGTTGTTGAATCTTC ATCAATGAAATGTTTTGCTGAAACACCAAACAAGAAGAATAAAATAACAATGGTAGGTGTCTTCCTGTCTATCTTATTGT GGAGGCTTCTTGAAGTATAATATGCAGCTTAAGAATACTTTTATTTTACTGAGACTGATTTATTGTTCATTTCATTCATG ATAACCTTGCTCATTCTTTAGATTGCTGAGCCACTAGAAAGAGGTCTTGCTGAAGACATAGAGAATGGTGTTGTTAGCAC TGACTGGAATAGAAAGAAACTGGGTGAATTTTTCCAGACTAAATATGACTGGGATCTTCTTGCTGCGCGATCAATCTGGG CATTTGGCCCTGATAAGCAGGTAAGTCTCTGTATCTGTCTATTGCTCTGTCTGTCTCCTGGAATTTGTGTGTAACATATT CAAGGATAATGCAGGGCCCCAATATTCTGTTGGACGACACCCTTCCAACTGAAGTTGACAAGAACCTGCTAAATGCTGTT AAGGACTCCATTGTTCAGGGGTAGGCATACAATACATTGAACTATTTAGATGTGTTGATCAATTAATCGTATATTGTAAA TTTTATTTTATTTTTGTTATTTAACAGATTTCAATGGGGTGCACGAGAAGGACCTCTTTGCGATGAGCCCATCAGAAATG TTAAGTTTAAGATTGTTGATGCAAGGATTGCCCCAGAGCCACTTAATCGGGGATCTGGCCAAATCATTCCAACTGCTCGA CGAGTGGCTTATTCATCTTTCCTTATGGCTACCCCTAGGTTAATGGAACCAGTATATTATGTAGAGGTATATTCTTGTTA TTTTATACTTCATTTATGGCTGCGTATCAAATTTGGTTGTAATCATTGTGGTTTCTGACATTTTAACTCATTGATTATTA CATATTGTCAGAAAGATCTGCATTCAAGCTGTTTAGCAGAGCATGTTCACCATTTTAATTTAAAAGCATGGCTAATTAAG TATGGCCAGAATAATATAATTTACAGAAGCTAGCAAAATCATTCTTATATTTACACTAATTCTAGATTGAATTTTGAGAC CAATAATTTTACTATTTCACTGATACTTGCTATGATGGCAATGTTATTCTACTGGCCTTTGCATCAGATTCAAACTCCAA TAGATTGTGTATCTGCGATCTACACTGTATTGTCTCGTAGGCGTGGACATGTTACTGCTGATGTTCCTCAACCAGGCACC CCTGCTTATTTAGTTAAGGTTAGTACCTAACCTTGGCTTTGTAATCTGTTTAATGGGTTGCTTCGTTAGACTGCTATGGT TTTGAGGATGTTCTGAGTATCAGGTTGAGTTTCTCTGTTTGAATCAAAAACTTGGTTTACTGACTTTGTCCCCCCCATCT TTCAGGCATTTTTACCCGTGATAGAATCTTTTGGTTTTGAGACTGACTTGAGATACCATACACAAGGTCAAGCATTTTGC GTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGTGATCCTTTGGACAAAGGCATTGTTTTGCGTCCCCTTGAACCGGC ACCAATCCAGCATCTTGCCCGTGAGTTTATGGTAAAGACAAGGCGTAGAAAGGTATATGCTCTTCCTCCTTCATATAATT GCGCTCTTTTTTTTAATTTATATTTTTTCTCGGAGGTGTTATGTTTAATGATATTATATTCCACATTTATGCTGTCACCT TTGTAACTGCTGATTTATTTATCCTTTTATGAGAAAGGTAAAGAAAATGAAAATATTTGCAAGTAGAAGACATGGTCATG CAAAGTATATTTGTGAAATATCTGGTGGGAAGAGCATATATTCTAACTGGCTACTGCAAAGCATTTAATACATGTTGCTC TTGCAGGGAATGAGTGAGGATGTGAGCATAAGTAAGTTCTTTGATGAGGCTATGATGGTGGAACTGGCACAGCAAGAGGC AGATCTTCATCAACAGATGATGTGATCTTCACTAAAGTTTCTGCTCGATTTGATCTTCATTTTGGATTTTTCTCAGAAGC TCAGGAGTTAAGCCTGTTCCACTGTGAAACTGAGTACAAGCAGTTGCATGATACAAGCAAATTATTGGTGCAGTACTCGT GAGTTGGCAGGGGTTTGGCACAGCTATTTCACGTACTGATGCAAGCTCTTATGTCACTGAAAGAGAATTGAATTATCAGT CTATTGTCCAATTGAAAAAAGCTTTCTTGTTTCTATCTAATTGTGTTGATTGGATCATGTTGATCTTATAACTTATTGTA GGAAACAAAACACTTAGAAAGAAAAAAGAAGTTAATTGTATGAAAGATACCACATAGGTTTAAGAGAATTCTATTTTCGA TGAAGCTACTGTGTAACAATTATAGCATGAGCCAAAACACAACCAGCTGATGCAGAACTGCACTTATGATATATTTGTCT GTGATCTAGATTTTATGGATGTGAACAATTCGCTAAATGGCTGGTGTAAATCGCTTTCTCAATCGTTTTGGTACTCTTGT CTAATGTTCATGTTGTATTCCACTTTTCAAGCCTGTCTGCATCATTTATGTTGGTATACTACTATTTTCTTTATGTGGCA TTTAGGAGGTGGTTGTTGGATGATAAAGTGATTTTGAATTCTGATGTGGTTAGTCAATTTATGTTGCTTCAACCATATCA GGGGCCCCTTGATAATTAATATCAAACATACTTTTCCATGAGTGGAATTAAAACAATTTTAGTA 

CDS sequence (LotjaGi4g1v0282200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGATAGCTTGTACGACGAGTTCGGCAACTACATCGGACCCGAAATCGAGTCCGACCAAGACTCCGACAGAGAACC TTCCGACGACGAACAGCCTTCCGACGCCGACACCGCCCAACCTTCCGACGGCGAGGCTCCCGCCACCAATGGCTGGATCA CCGCATCCGGCGACCCCAACGACGTCGACATGGTCGACAACCAGGTGGTCCTGGCGGAGGACAAGAAGTACTACCCCACC GCCGAAGAAGTCTTCGGCGAAGATGTGGAAACCCTAGTCATGGATGAAGATGAACAGCCACTGGAGCAACCCATTATCAA GCCTGTGAGGAAGATGAAGTTCGAGGTTGGCGTGAAGGATTCGTCAACCTACGTTTCGTCACAATTTCTTCTGGGTCTCA TGTCGAACCCTTCGTTGGCTAGGAATGTGGCTCTTGTGGGGCACTTGCAGCATGGGAAGACGGTGTTCATGGATATGCTG GTGGAGCAGACTCACCATATGTCCACGTTTGATTCACAGAGTGAGAAGCATTTGCGGTATACTGATACGAGGATTGATGA ACAGGAGAGGAGGATTTCGATCAAGGCTGTGCCCATGACGATGGTGCTGGAGGATAGTAACTCCAAGTCGTATTTGTGTA ATATTATGGATACTCCTGGCCATGTTAACTTCTCCGATGAAATGACCGCCGCTTTGAGGCTCGCTGATGGTGCTGTTTTG GTCGTTGATGCTGCTGAGGGAGTGATGGTAAACACTGAGAGAGCAATTCGCCATGCGATTCAGGAGCGACTGCCCATTGT TGTTGTACTCAATAAGGTTGACAGGATCATAACTGAACTTAAACTACCCCCAAAAGATGCTTATCATAAAATAAGGCATA CTTTGGAAGTCATTAACACTCACATATCTGCTGCCTCCTCGACTGCGGGTGATGTCCAAGTTATAGATCCAGTTGCTGGG AATGTTTGTTTTGCAAGTGGCACTGCTGGGTGGTCTTTTACATTGCAATCATTTGCTAAATTGTATGGGAAGCTACATGG AGTTCCTTTGGAGCCTAATAAATTTGCTTCTCGCCTTTGGGGAGACTACTATTTTCATCCTGATACCAGAACCTTCAAAA AGAAACCCCCTGTCAGTGGAGGAGAACGATCTTTTGTTGAGTTTGTACTGGAGCCGCTTTACAAGATATATAGCCAAGTA ATTGGGGAGCATAAGAAAAGTGTGGAGACAACTCTAGCAGAACTTGGAGTTACTCTAAGTAATGCAGCTTATAGATTAAA TGTTAGACCATTGCTAAGGCTGGCTTGTAGCTCTGTTTTTGGTCAAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATA TACCTTCCCCGAGAGATGCCGCAGTAAAGAAAGTTGATCATATATATACCGGACTGAAAGACTCATCCATCTACAAAGCC ATGACACAGTGTGATTCTTCAGGGCCCCTAATGGTTAATGTGACCAAGCTGTATCCAAAGTCTGATTGTAGTGTCTTTGA TGCTTTTGGTCGAGTTTATAGTGGCAAGATACAGACTGGACAGACAGTACGTGTTCTGGGAGAAGGATACTCACCGGATG ATGAGGAGGACATGACTGTAAAAGAAGTAACTAAGTTGTGGGTATATCAAGCCCGTGATAGGATGCCAATATCGGAGGCT CCTCCAGGTTCTTGGGTTCTTATTGAAGGTGTGGATGCTTCAATCATGAAAACCGCCACTCTATGTAATGTCGATTATGA TGAGGATGTATACATATTCCGCCCTCTCCTGTTCAATACTCTGTCAGTGGTGAAAACAGCGACTGAGCCATTAAATCCAA GCGAGTTGCCTAAAATGGTGGAGGGCCTGAGGAAAATTAGCAAGAGTTATCCTTTAGCGGTTACTAAAGTTGAGGAGTCT GGGGAGCACACTATACTAGGGACTGGCGAGCTGTACTTGGATTCAATTATGAAGGACCTAAGAGAGCTCTATTCTGAAGT CGAAGTCAAGGTAGCAGATCCTGTAGTTTCGTTTTGTGAAACTGTTGTTGAATCTTCATCAATGAAATGTTTTGCTGAAA CACCAAACAAGAAGAATAAAATAACAATGATTGCTGAGCCACTAGAAAGAGGTCTTGCTGAAGACATAGAGAATGGTGTT GTTAGCACTGACTGGAATAGAAAGAAACTGGGTGAATTTTTCCAGACTAAATATGACTGGGATCTTCTTGCTGCGCGATC AATCTGGGCATTTGGCCCTGATAAGCAGGGCCCCAATATTCTGTTGGACGACACCCTTCCAACTGAAGTTGACAAGAACC TGCTAAATGCTGTTAAGGACTCCATTGTTCAGGGATTTCAATGGGGTGCACGAGAAGGACCTCTTTGCGATGAGCCCATC AGAAATGTTAAGTTTAAGATTGTTGATGCAAGGATTGCCCCAGAGCCACTTAATCGGGGATCTGGCCAAATCATTCCAAC TGCTCGACGAGTGGCTTATTCATCTTTCCTTATGGCTACCCCTAGGTTAATGGAACCAGTATATTATGTAGAGATTCAAA CTCCAATAGATTGTGTATCTGCGATCTACACTGTATTGTCTCGTAGGCGTGGACATGTTACTGCTGATGTTCCTCAACCA GGCACCCCTGCTTATTTAGTTAAGGCATTTTTACCCGTGATAGAATCTTTTGGTTTTGAGACTGACTTGAGATACCATAC ACAAGGTCAAGCATTTTGCGTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGTGATCCTTTGGACAAAGGCATTGTTT TGCGTCCCCTTGAACCGGCACCAATCCAGCATCTTGCCCGTGAGTTTATGGTAAAGACAAGGCGTAGAAAGGGAATGAGT GAGGATGTGAGCATAAGTAAGTTCTTTGATGAGGCTATGATGGTGGAACTGGCACAGCAAGAGGCAGATCTTCATCAACA GATGATGTGA 

Protein sequence (LotjaGi4g1v0282200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDDSLYDEFGNYIGPEIESDQDSDREPSDDEQPSDADTAQPSDGEAPATNGWITASGDPNDVDMVDNQVVLAEDKKYYPT AEEVFGEDVETLVMDEDEQPLEQPIIKPVRKMKFEVGVKDSSTYVSSQFLLGLMSNPSLARNVALVGHLQHGKTVFMDML VEQTHHMSTFDSQSEKHLRYTDTRIDEQERRISIKAVPMTMVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVL VVDAAEGVMVNTERAIRHAIQERLPIVVVLNKVDRIITELKLPPKDAYHKIRHTLEVINTHISAASSTAGDVQVIDPVAG NVCFASGTAGWSFTLQSFAKLYGKLHGVPLEPNKFASRLWGDYYFHPDTRTFKKKPPVSGGERSFVEFVLEPLYKIYSQV IGEHKKSVETTLAELGVTLSNAAYRLNVRPLLRLACSSVFGQASGFTDMLVQHIPSPRDAAVKKVDHIYTGLKDSSIYKA MTQCDSSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPDDEEDMTVKEVTKLWVYQARDRMPISEA PPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEES GEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGV VSTDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPI RNVKFKIVDARIAPEPLNRGSGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQP GTPAYLVKAFLPVIESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKGIVLRPLEPAPIQHLAREFMVKTRRRKGMS EDVSISKFFDEAMMVELAQQEADLHQQMM 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 61 61 -
Pfam 3 120 118 2.7E-35
MobiDBLite 34 56 23 -
PANTHER 87 981 895 0.0
PANTHER 87 981 895 0.0
SUPERFAMILY 126 455 330 8.72E-82
Gene3D 134 456 323 4.9E-170
ProSiteProfiles 138 346 209 36.735
Pfam 140 454 315 2.7E-49
CDD 141 343 203 1.62696E-109
TIGRFAM 141 281 141 1.3E-15
PRINTS 142 155 14 7.8E-10
Gene3D 175 582 408 4.9E-170
PRINTS 214 224 11 7.8E-10
PRINTS 230 241 12 7.8E-10
PRINTS 266 275 10 7.8E-10
Gene3D 335 440 106 4.9E-170
SUPERFAMILY 456 586 131 1.01E-35
CDD 490 583 94 6.54836E-47
Pfam 508 582 75 4.6E-11
Gene3D 601 677 77 1.3E-25
SUPERFAMILY 602 674 73 6.47E-15
CDD 602 673 72 3.36798E-37
CDD 673 850 178 4.42546E-123
SUPERFAMILY 676 844 169 5.56E-57
Gene3D 680 959 280 7.2E-119
Gene3D 685 962 278 7.2E-119
SMART 719 840 122 8.7E-19
Pfam 725 839 115 1.7E-22
SMART 842 931 90 1.4E-19
Pfam 842 930 89 4.5E-22
SUPERFAMILY 845 931 87 8.63E-27
CDD 845 924 80 5.98686E-50

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0282200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…