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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIH core complex | The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | General transcription factor IIH subunit [Medicago truncatula] gi|357509341|ref|XP_003624959.1| | 20 | ||
| – | GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|A0A1J7IMI8|A0A1J7IMI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661700 | 22 | ||
| – | GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|G7L5Y2|G7L5Y2_MEDTR General transcription factor IIH subunit 2; Found in the gene: LotjaGi1g1v0661700 | 22 | ||
| – | GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|A0A1J7IMI8|A0A1J7IMI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661700 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |