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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4107020 |
| Transcript ID | Lj1g3v4107020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | General transcription factor IIH subunit [Medicago truncatula] gi|357509341|ref|XP_003624959.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 421 | 421 | 1.60E-221 | ||
| PANTHER | 1 | 421 | 421 | 1.60E-221 | – | |
| PIRSF | 5 | 412 | 408 | 7.20E-160 | ||
| SUPERFAMILY | 81 | 249 | 169 | 1.70E-16 | ||
| CDD | 82 | 264 | 183 | 1.60E-101 | ||
| SMART | 84 | 260 | 177 | 1.40E-12 | ||
| ProSiteProfiles | 86 | 225 | 140 | 9.161 | ||
| Pfam | 90 | 280 | 191 | 3.40E-84 | ||
| TIGRFAM | 302 | 411 | 110 | 2.50E-36 | ||
| SUPERFAMILY | 337 | 410 | 74 | 8.06E-16 | – | |
| Gene3D | 358 | 410 | 53 | 1.90E-18 | – | |
| Pfam | 363 | 411 | 49 | 1.20E-18 | ||
| SMART | 363 | 411 | 49 | 5.90E-21 | ||
| ProSitePatterns | 384 | 404 | 21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIH core complex | The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v4107020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4107020.1, powered by CORGI.
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