Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0661700 |
| Transcript ID | LotjaGi1g1v0661700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|A0A1J7IMI8|A0A1J7IMI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122267742..122275375) extracted from Lotus japonicus Gifu genome v1.2.
GGGTTAAATATGTTTTCCGTCCCTAGACTTTTAGCGAGTGCTGGTTTCCGTCCCTCGCCGGAGTAAAAGCTGACTTTAGC CCTTGAACATAAGGAAAATAGCTGGTTTTCATCCCTGCTGGAGTGGTGGCGCTGACCACCGTGGCCACATGTCACGAGAA GCCTATGTGGCATTGCCACATCAGTTAATGAACATAGCTGGATTTTTTTTTCTTTTTTTTTTTTCTTAATCTCAAATCAC TAATAAGTAATAACGATAACTAAATCTTATCTAATCTAATTCTTAAATTATTTAATCTTATTGTTTTTTGTAATGATGAA CTTTTACATAAAAATTGTTCAAATTTTTTATCTCTTCCTCTTCAACCTCGTCTGCATCTCATCTTCTTTCTTCTTCTTCT TCTTCTTCTTCTTTTTTATTCTTCTTCTTCCCACCACCCCCCATCTCCCACACTCTCCGTCACCCCAACCCCAGCCCTAA TCCTTTTCCCTTCCAGAAATTGAAAACCATCAACCCAAAATCACAAAACTAAAAAACAACCTTAACCCATAACACCCAAA AACCCAAAAAACACTATCTATATCATGTATGATGGAACAACCCAAAATTACCACCCAACCCCAACGTGCACCGCAACCCC CACCCCTTATTCCCCAAAACCCCAATCCTCACCCAATAGCAACCCCAATCCCTAACCCAGACAAAAGTTATGAAACCCAA AAATCCCAGAATCCAGCAAAAGGGGAAGAAGAGACGAAAAATCAAAAATCAGATCTTGATGATGGGTAATTGGAGAAGAA GAAGAGGAGAAGAAGATGAACCATAAGCCCTGCTGTAACACCCCCCACCTAGAACCAACAACCACCGCCCTCCACCAGAA ACCGAGCCCCCACCGCTAAAAAACGCAACCACCACCGCCCAAAACGCAACCACCACCACTGCTCATATACCATCAGATCG GCACCACCTTTACCCAGATTCGAAACCCAAATCCAACTAAAGTTCCTTCCTTTTTACAGAAACCAATCATCATCTCCCAA ACTTCTTGTATGTTGGCATTCAGATCTGAAAGGGAAATAAACTGAGGTTAGGGATTTGGTGTGTTGTTAAAGATGAAGAT GTTGATGATGATGGATGAGGTAGATGTTGATGGTGGGGGAAGATGCTGATGGTGATGGGTGATGAAGATGTTGATGGTGG TTATGAAGATTAGGAAGATGTTAAGCGTTGAAATGAAGATTTTATTTTAAGATGTTGAAGGGTTTTATGTTATAATTATT TTGTTATTTTTATTTAATATTTTTCATAATTTAATAATTAGTTAATTTAATGTGGAATTAAAAAAAATAAAAATCCAATT AGACCTCATTAACTGATGTGGATGTGCCACGAAGGATGGCCGATACATGTGGAGACGGTGGTCAGCGCCACCACTCCGGC GGGGACGAAAACCAGCTATTTTCCTTATGTTCAAGGGTTAAAGTCGGCTTTTACTCCGGCGAGGGACGGAAACCAGCACT CGCTAAAAGTCTAGGGACGGAAAACATATTTTACCCTTTATTTATTTACTTTTATCGATAATTCTATTGGTTCACTAGGA TGGGTTAAGTTATCCTGATGAATCAAGATTAATTTAGACAAGCCATTCTAAAACCTTGGTGCCCTAACCTCCCACCCAGT GTCTTCTCTGCACTGCATCTCGTCCCTCTACTCCTCTGTGCCAGAACCGCTGTTCGGTGGACGAAGTCACGTGCTCCACA CTCCTCTCATCGCCTTTGCACGTGTCTGGGCTTCACCGTGTTCACTTCTTCAAGCAAATCCCCAGATTCGTATGTGGTTT TGGTTTATGCACTATGATTAATTGAAATTTCTGTGTGTGTATTTGAATTCCATTTGTTCTCTGTTTTCTTATTATTGGTG GGTAATGTGCTATCATCATGTTTGGGTGTGTATCTGGGCAAGTGAGAAATGATTCATGTTTAAATCTTTATGTTAGTATT AGTATAAATATGAGCAATGAGTCTATATGTTGGTTCTCTTAGAGCTTAGCAATTCAACTAGTAGTAGTAGTAGTTATTTA TTTATTATTTATTTACTTACTAATGCTCTATATTGTTGAAATCACAAATTGAAGCACAATATTGCTTGATTCAATGACCA TTTTGTAAGTTGAGCAATCATGATCCTAGCGCGCGCTTGACTCATTCTGTTGTGGTCACAAGATTGGCCAATCAATGAAG TTGTACACGCCTGTAGAGAAACCCTCATTTCTTATGAGATTTCTTTTTGCACCTCCATCCGGGGCATCTTCTGATTCTAG ACTTTCAGGAGCATATTTGTCACACCTATTATCATAATGGAGTTTACTCCTTGTGAGGGACTTCCAAATTCATAATAATT CTTAAAAGCATAATATGTGTGGAGTAAAGGTTGTATTGTACATGGTTCAAATATTACTGTGTTTTTCAAGTATAAATGTC TTGTATGTCGTGCGATGCTAACTGAATGAAAGAAAGATGACTCGAAAGAGGGTCTTATATCATTGCTAACGTGTGTGTGG AATGTGGATTAAGTATTTCACTGACAACTACAATGGAATATTTATCACATGCCTTCTATGTATGGATTAAACATTCTGTG CCAATCATTCTGTTGCTTTCCTAGCTCCTTTTGTTGTGTGTGAATGGTTCATTTCTGTACGTGTCATTGCACCAAAAGGT CTCTTTCAAGTCCTGATATTTCAGTGTGTTCCATGATTTATCATTGCTGCCCTTGGTTCACTAACTGTATTATTTTTTGG TGTAGAAATTATGAATAATATTTCTGGAAGACCACTTAATGGAGAAGTAGAAGATGATGATGAAGATGAAGCTAATGGTG GAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTT CGCCCCATAGATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCATCCAAGGCAGCTACTGC ACGAATTCAGAAGGGTCTTATACGATACCTTTACATTGTTGTAGACCTGTCCAAGGTATTTGATTGATTACTTTAGGGTT TCTGTGGTTGCTTCTGAGTTCCCTTTGACATGGAGCTTTGCTTTGATTGCTTGAAATTTGGATTCCAATTGAGGATGGGG CGTATGTGTTAAAACTCTTCATGAATAAACTTGTGAAAGTTGAATTGACTTAGTTTTCTCGGATGGCTTTTCTACCAATA TCTGTAATTCCTTTCATGGGCCCAAGAAACCTTTACTTTTTAGATTTTCATCTTTTTCCTTTACTAATGCATTCATATTT GTTCAATAAATTAGCACTTAAAACTTCAAATCAACTAGATTGTTCAGAAGCACACATCAATGTCAAACTGGTATTTCCAT GCTGAACAGTTCTTATCCTGAAAAAGATATTAGGAATTTCTTATGGCCCTACAACTACAAGTATCTTATTCATCTTGTGA TTGAGATAATGTTTATATTAGAAATGAAGTTACTGGGAGAAATATATAAATATGGACTACAAAAATGTTGAATCTTGCAG TTTGATCTATATCCTGTTAATCTTTTTCCCTTGTATTTATAACTCTTTCTGTCATCATGTTAAGGCAGCTGCTGAGACGG ACTTTCGACCAAGTAGGATGGCTGTGATAGGGAGACTGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTT AGTCATGTTGGCCTGGTTACCATAAAAGATGGGGTTGCTCATTGCTTAACAGATCTTGGTGGCAGTCCTGAGTCCCACAT CAAAGCTTTGACGGGTAAACTGGAGTGCTCAGGTGACGCATCCCTACAAAACGCACTAGAGCTTGTTGTTGGCTATCTAA ATCAAATCCCATCATATGGTCATCGTGAAGTTCTGATCTTATACTCGGCTCTAAGTACATGTGATCCTGGTGATCTCATG GAAACCATCCAGAAATGCAGAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACA TATCTGCCAAGAAACAGGAGGAACTTATTCTGTTGCACTAGATGAGGTTAGTTTTTTGATTATGATTGAAACCATGTAGA TGCAGTACAAATTCAAATTATCCGTGTCTGTAAAAGGGATTTGAGTTTTTACAATCATGCAACCTTAATCTGAATATACT TTTAGAATATTGTTGATCAACTCTAAATGTGTTTGTTCCAAATGCTTGTAAATTTATGAATCTATACATTGATACAGATA TTTACTTCCCATGCAGTCCCACTTTAAAGAGTTAGTTCTAGAGCATGCTCCACCACCTCCAGCAATAGCAGAGTATGCTA CTGCTAACTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCAGTTGCAATTTGTACTTGTCATGAAGAGGCT AAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGCGTCTGTGGATT AACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTTCCTATAGTGCCATTTGATGAAATCTCTCCAT CGTCTCGAAATGATCCAAGCCACAGTTTCTCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGTAAGTTT GTGCAGAAAAGTTGTCAAGGTTGAATTCCTTCATACATTTATGATTTAGCAATTTGCAATTTTATCATGTTGACCAACAT GCTATGTCAAACATAGATGGGTTAGTTTAAGGTTGAAATATTATTAAAAATAGTGAATGGTCTAATTTCAGAAGTTATTC CCTGAGATTTTATCCTTAAAGCCTTATAAAAAATCATAAATGGGTTAATTTCAGTGTCTTATTGCCTATCAATATTTATA CGTTTGAGATGTTATGTTAAGTTTTTTGTTGTTGTTTGAGATGTTATGTTAGCTGTAGTCAAAGAGATTAGCAATAGTCC TATTGAGATTTGAGAGATGGGCGGGCTTTCATTTTGTAAATACATATCTTGGTCTTGGTAACTTAATACAACTTCCATTG GGAAGCTTAAGCATTAAAAAGAGAGGCGCTAATGTCGCATCTGTGATTAGCATCCCTGTTAACCACTTTGAACGTGGTGG CGTACCATTACATATGAAGTACATACTATGGTTTTTATTAGCAATCAAACTATTATGCAAAATGCTAATCATATAGTGTC TTACTGCTAGTATCTTGTCTATCAACTGTGATATCACGTACATGATAATAGGGAATAGTTTTTGCCAGACATAATTGCCT TAGCTTTCTTGTCATCATGATGATGATGCATCTATACTTTCAAGCTAGAGTTGATGGTAAAGTTATGCAATTGATCCCAA ATTTGAGGAATATAAAACTATGGCTGCTTAAGTAACATGTGGACAATGGTGGATTCGGATTACGGTGTGTATGCTTCAAT CATACTGATTACAATTGTCAAATAATTTTAAGTTTTTGAAGGAACATGATTTTAAATGACTGGCTGTGGTCATATTTCCG TGAATATACGGCAGATGGCTCCTTTGGGTTAAGGGTATCTATTTTTTATGTGATTAGTTTTTTCCTATATGTAGTATAGC ATATATAATATGTTCTTGCTTTATTTTCCTACAACCCCATTGACTGGTTGTGGAACAGGAAACGTGCCTGGAATTTCGGT TACTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCATGAGAGCTTACATAATTGCCCAGGCT GTGAGAGTTTCAGGCATTCTACGTCAGTAACTGCTGCCCAATGATTGCATACCTTCTGCCCTGAAAAAGTTGCCATCTAA ATGGTGTTAATATACTGTCTCTCATTGCTATATTACATCCACCTACCTGACTCATGAATGAGTTCTGGTGCAAAGTGACT GACTAACATTATCATCAATGATCACAATGATTTGGGCTTGATGCAAGTTCTTAGAGAGTCAACGCTTCACAGGCAGGAAA ACATTAGTGATATTATTTATACAAGGGTGACATTTTTCTCTTATCATTTTAAATTCTTATCTTCCTTTTCCTTCTTTTGT TCTTTGCTGGAAGTTGAGGCACATGTGAGAATACCTTTTATTTTACTCCATGTTAAAGTTGAGCATGAATATCTCCATCA GCAGTTTTTTTATCAATGGGCTGACACCACCTTTCTTGCTAGCAGATTAATTTTGATCATTAAATTGTCATTGCTAAATT TGTATGAGATATTTATGTGTTTTTCTTTTAGCAATCATTTTTGTGAACATCTATCCTTAGCTAACATTTCATTGATGTTG TATGGTCATAGAAAATTTGGCCTGTGAAATACCTTCAGGGAACATATATATGATAGAATGCCATTTGATTTGAGAGTTAT GGCTTCTAACAGAACTCAAAGAGGAAGAAAACTTATTGCATACTGTACTTGGTGATATGGGCCAAATCACTTATGAGGTT CAAATTGGATTCAAGCCAACACGGCTCAACTGAGAAGAAAAAAGCAAACCAAAAATTATCCTAACATCTTTTTATCTTAG GTTTTGGCTAGTCGAGCTTCAGAAAATTATTCCAAGTTTGGATATCCATTGAAACATGTGCAAATTAACATTAGCATACA CTTTAAGGTAGCGTTTGGTAACGGAACGGGACAGGACGGAACGAGATGGAACGGAACGTAACAGGACAATAATGTTCTGT GCATTGTGTTTGGTAAACAAAGCATAGAACGGTACCATTAGATCAATACCATAAGATTAATTACATATATACCAAAATTC AAAATTTTGTAAATAATTAATTAAATCATAATAAAAAAAACACATTGTCCCTTTAACAGGAAAAAATTGCAGATGCCAAA CCCAGAAAATTTCTACGCATCTTTTGTTGTGAGATCAAACAAATTCTAAATTTCTTATATCTCCAAATTCGTAAAATTTT TAAGAAAACACGTTCTCACCATGAACAGTTGTCCCCAAATGCACAATCCAAAAAAATTCTAAGTTCTTTAACCCTAATTC TTCTCTGCAATTATTGTTCCCCTATTTTTGCAACAGTGCCTGTAGAAGCCGCCTCCATCCATCACTGTTTGAAAGGTATT GAATAGAAAATGAATTGGACTTCGCTGGAAAAAAAAAGAGTTACGTGAATTACTTAATAGTTTGTGTTGCTAGATCATAG AGAAAATGATGCACACTTGCATATGGGAGAAAGGTTCAACGACGAGGACAAGATTGAAGGGTACGAATTAGGAAAAATAT AGGATAAACCTAGGGATAAATTTGTCAATACAAATATTTTTAAAAAGTGTTCCGTCCCGTTCCCTTCCGTTCCACCCTTT TTTAGAGAACTAAAGTGTTCCGTTCAGAAGCCTTATGTACCGTTCCGTTCCATCTTAAAAACATGACAAACGTGGAACAG AACCCAGATGTCCCGTTTCATTCCCTTCTCAATTGTCTACCAAACGCTACCTAAGGCAAAAAGAGAACGGAACTTCGTAT ACAAACACAATTAACTTACTGACAAGTGACAAGG
CDS sequence (LotjaGi1g1v0661700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAATATTTCTGGAAGACCACTTAATGGAGAAGTAGAAGATGATGATGAAGATGAAGCTAATGGTGGAGGCCTTGA AGCCTGGGAGAGAACTTATGCTGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAG ATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCATCCAAGGCAGCTACTGCACGAATTCAG AAGGGTCTTATACGATACCTTTACATTGTTGTAGACCTGTCCAAGGCAGCTGCTGAGACGGACTTTCGACCAAGTAGGAT GGCTGTGATAGGGAGACTGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGCCTGGTTA CCATAAAAGATGGGGTTGCTCATTGCTTAACAGATCTTGGTGGCAGTCCTGAGTCCCACATCAAAGCTTTGACGGGTAAA CTGGAGTGCTCAGGTGACGCATCCCTACAAAACGCACTAGAGCTTGTTGTTGGCTATCTAAATCAAATCCCATCATATGG TCATCGTGAAGTTCTGATCTTATACTCGGCTCTAAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCA GAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACATATCTGCCAAGAAACAGGA GGAACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAGTTCTAGAGCATGCTCCACCACCTCCAGCAATAGC AGAGTATGCTACTGCTAACTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCAGTTGCAATTTGTACTTGTC ATGAAGAGGCTAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGC GTCTGTGGATTAACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTTCCTATAGTGCCATTTGATGA AATCTCTCCATCGTCTCGAAATGATCCAAGCCACAGTTTCTCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTC AGGGAAACGTGCCTGGAATTTCGGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCAT GAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTTCAGGCATTCTACGTCAGTAACTGCTGCCCAATGA
Protein sequence (LotjaGi1g1v0661700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNISGRPLNGEVEDDDEDEANGGGLEAWERTYAEDRSWESLQEDESGLLRPIDNTAIHHAQYRRRLRALASKAATARIQ KGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIREFFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGK LECSGDASLQNALELVVGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECR VCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSFSNTCFGCQQSLLSQGNVPGISVTCPKCKQQFCLDCDIYIH ESLHNCPGCESFRHSTSVTAAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PIRSF | 5 | 412 | 408 | 6.6E-160 | ||
| PANTHER | 24 | 412 | 389 | 3.2E-172 | – | |
| Gene3D | 80 | 265 | 186 | 3.4E-69 | ||
| SUPERFAMILY | 81 | 248 | 168 | 1.9E-16 | ||
| CDD | 82 | 264 | 183 | 6.497E-103 | ||
| SMART | 84 | 260 | 177 | 2.6E-13 | ||
| ProSiteProfiles | 86 | 225 | 140 | 9.161 | ||
| Pfam | 90 | 280 | 191 | 4.3E-84 | ||
| TIGRFAM | 302 | 411 | 110 | 2.5E-36 | ||
| SUPERFAMILY | 337 | 410 | 74 | 8.06E-16 | – | |
| Gene3D | 345 | 409 | 65 | 3.5E-19 | ||
| Pfam | 363 | 411 | 49 | 4.7E-18 | ||
| SMART | 363 | 411 | 49 | 5.9E-21 | ||
| ProSitePatterns | 384 | 404 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIH core complex | The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0661700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…