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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. | ||
| Cellular component | RQC complex | A multiprotein complex that forms a stable complex with 60S ribosomal subunits containing stalled polypeptides and triggers their degradation (ribosomal quality control). In budding yeast, this complex includes Cdc48p, Rkr1p, Tae2p, Rqc1p, Npl4p and Ufd1p proteins. | ||
| Biological process | Ribosome-associated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide encoded by an aberrant message and associated with a stalled ribosome. Degradation is initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the ribosome-associated protein. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| | 12 | ||
| – | PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| | 22 | ||
| – | PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| | 22 | ||
| – | E3 ubiquitin-protein ligase listerin-like protein; TAIR: AT5G58410.2 HEAT/U-box domain-containing protein; Swiss-Prot: sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin; TrEMBL-Plants: tr|K7KAA3|K7KAA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0111300 | 22 | ||
| – | E3 ubiquitin-protein ligase listerin-like protein; TAIR: AT5G58410.2 HEAT/U-box domain-containing protein; Swiss-Prot: sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin; TrEMBL-Plants: tr|K7KAA3|K7KAA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0111300 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 20.00 |