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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2365890 |
| Transcript ID | Lj2g3v2365890.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max] gi|356499002|ref|XP_003518333.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| MobiDBLite | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 36 | 36 | – | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| PANTHER | 1 | 249 | 249 | 0 | – | |
| Phobius | 20 | 31 | 12 | – | – | |
| Phobius | 32 | 36 | 5 | – | – | |
| Phobius | 37 | 1886 | 1850 | – | – | |
| Gene3D | 64 | 149 | 86 | 3.60E-06 | ||
| SUPERFAMILY | 69 | 225 | 157 | 2.88E-10 | ||
| Gene3D | 203 | 434 | 232 | 4.70E-04 | ||
| PANTHER | 265 | 1192 | 928 | 0 | – | |
| SUPERFAMILY | 274 | 392 | 119 | 2.88E-10 | ||
| SUPERFAMILY | 431 | 469 | 39 | 2.88E-10 | ||
| MobiDBLite | 484 | 512 | 29 | – | – | |
| Gene3D | 802 | 943 | 142 | 4.70E-04 | ||
| SUPERFAMILY | 931 | 951 | 21 | 2.88E-10 | ||
| SUPERFAMILY | 1069 | 1142 | 74 | 2.88E-10 | ||
| Gene3D | 1080 | 1212 | 133 | 4.70E-04 | ||
| SUPERFAMILY | 1171 | 1189 | 19 | 2.88E-10 | ||
| PANTHER | 1214 | 1351 | 138 | 0 | – | |
| SUPERFAMILY | 1325 | 1416 | 92 | 2.88E-10 | ||
| PANTHER | 1371 | 1886 | 516 | 0 | – | |
| Gene3D | 1371 | 1392 | 22 | 4.70E-04 | ||
| Gene3D | 1448 | 1493 | 46 | 4.70E-04 | ||
| SUPERFAMILY | 1830 | 1886 | 57 | 1.44E-12 | – | |
| Gene3D | 1833 | 1886 | 54 | 4.60E-10 | ||
| CDD | 1835 | 1886 | 52 | 6.07E-09 | – | |
| Pfam | 1835 | 1883 | 49 | 2.40E-07 | ||
| SMART | 1835 | 1883 | 49 | 0.0038 | ||
| SMART | 1836 | 1882 | 47 | 5.50E-04 | ||
| ProSiteProfiles | 1836 | 1883 | 48 | 12.297 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v2365890.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2365890.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.