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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | NuA4 histone acetyltransferase complex | A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). | ||
| Biological process | Histone H4 acetylation | The modification of histone H4 by the addition of an acetyl group. | ||
| Biological process | Histone H2A acetylation | The modification of histone H2A by the addition of an acetyl group. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| | 14 | ||
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| | 12 | ||
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| | 14 | ||
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| | 12 | ||
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356505649|ref|XP_003521602.1| | 6 | ||
| – | SWR1-complex protein [Medicago truncatula] gi|357511425|ref|XP_003626001.1| | 6 | ||
| – | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| | 14 | ||
| – | SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|G7KTN9|G7KTN9_MEDTR DNA methyltransferase 1-associated protein; Found in the gene: LotjaGi1g1v0757000 | 13 | ||
| – | SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|I1NBE9|I1NBE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0757000 | 13 | ||
| – | SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|V4U6K6|V4U6K6_9ROSI Uncharacterized protein; Found in the gene: LotjaGi5g1v0242300 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 10.00 |