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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242300 |
| Transcript ID | LotjaGi5g1v0242300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|V4U6K6|V4U6K6_9ROSI Uncharacterized protein; Found in the gene: LotjaGi5g1v0242300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55066502..55074263) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATGTTTACTGTGTGGAAACATTGCAGTCAAACTACAAAGCATTACATATTCTGAGACTGAGCATTATGCAGCAGAT ACACAAACCCTAATTAGCTACGATTGAAGAACAAGGTCCAGAAAATCCCCAAATCGAAACTCACTTGAATTGAAGGCTGA AACCCTAATTGGAGTGATTGTGAACTCTAAACTCTGAATTGTCACCGTCCAATGTCCATGGATGCGAAGGAAATCCTGGG ATTGCCCAATAGTTCCTTCCTTCAAGCTCAGGAGGAGAAGAACTCTCAACCTCAGAGAAAACCAGATGGCATGTCGAGGG AGGTACTTTCTCTCACACACTTTCCCTCTCCTTCTGTTTTCCCTCCAATTTGCCCAATTGAACAGTTTTGGTTGCTGTTG AATTCATTGTAGGTTTATGCGCTTACTGGTGGTTTGACACCTCTTATGCCTACCATTGATCCCTCTCAATTGAAGAAAAG GCCACCCTCAGATGAAAAGGTTACTGAGTTTGATTGAACTTGTACACTGTTAATGATGCTAAGTTTAGTTCATTTCTTAT ACACTGTAAATTGCATTAGGTAACGAAGCATGCGAAGCTAATCGTAGTATTACGTGTATACTTTATTTGCTCTTTTTGCC CCCTAGGATAAGGAAAGATTCCATAGAAGAAGAAAAAGTGTAATAAGATGTCCTCTCATTTTTTGGCTACCCATTTAAAT AATTTCTTTAGATTATTCATTTTTTTTTGCAAATTATACTTCCCGAACAGGTGGGGACATTCGGGTCGAAGACAATATAT ATATTATTTTTACTCTATTCACTTGGGTGAAAATTCCGGGTTAGTTTAAATTGATTGGTGCCTGTTGCAATGTAGGTTGA GGATAGCAATTGCTTAAATTCTTTTTCAAGGTTTTATTTTATGCATTTTTGACTGACAATGTTGTCTTATTTTGAGCTGG TCCCTCCTTTAGGTCAGTTGGCAATGGCTTCCGTTCACGAATTCTGCCCGTAAAGATGATCTTCACCTTTACCATTGGGT GAGTTAATATGTTTTTCGCTGCGAAACTAAATAGTATCTCTTCATGCATGGAAATGTGGTAGTCATAATTGCAATTCGAT GTGAGTCCTCACTCGACTGATACATATTGGGTGAAGTTACATTTTGTTGCCGGTATCCAATGAATGTCGATTCTGCTTTT TTCCAAGGATACAGATTTTTCCGGGACTTGTGGGAGGTAAAAAGTCACTGGGATGATGATTTTGTGGCAAGAATTTATTG ACAGAGAGGTATATGAAGAGGACTTGTGAAAAAATGCTTGGGTGCACTGTCACGGGCTGCTGAGATGGATGGACTCAGCA GAACAGTGAACAGGGTGTGGGGGCATGTCAATTCTTTTGCAATGATTAGCCACCAGTGTAGGGTGGTCTGGCACCAGTGG CGAGGGTGGGGTGGTAAATAGGGGGTGAAACACCTCAGATCTGACTCGGACACTGCTAAGGACAAAGAAACCAAAGGGGC ATTTGAAAAAAAAAAATTGGGTTCTTTTTTTTTTATTTTAGTAATTAAGGTTGAGAGAGAAAATTATGAAATACATTAAA AAGGAAATGGAGAAATTACTGCATTTCTATGCTTAGTTTGACCTAATAATTTTTTTTAATTATTGTTCATAAATCTTAGG GTTCACACCAGGGTTGTCAATAGCGCGCTATAGCGTTGTAGTGGCCCTTGGCCGCTCCTAGTTATTGCGTGCGGTGAAGT ACAGTGTAGTGGCTGTTGTGATCACTAAAGAAGAGGAAATAGCAGCCATAACGGCGCTATTTGGCAGAACTGATAAAACC CAAAAACAACCCACAAAAAGTTCATGTTAGAGCATTTTGGGGAGATATTTCAAGGTTGTTGCTTCGGAACCATACTGAAT ATGGTCTAGTTTGAGGAAGATGAGGAGGAAGTGATATAGAACTTTCATGTTTTTTAGGCAGTTTGGTTTAGGATTCAGAG ACTTAAACTTCTTGTTACCTTGTCTTTTGTTGGTACTAGTATGTTTTACCTATGACTTTTAATGTTAATTATGAGTGCCA TATATTGAGTATTTTTTATCATTTATATGTATATAGTTATACTATATAAACAATATAAAATTCAGCATAGCCGCCATCCC GCTCTGCGCTATGCTGGAATAGCATTTTTGTGGTCGGCCACTATGCCCCGCTATCCAAGATTGACAACACTTTGTTCACA CTTCACATTACATTTCAATTCATGATTTAGAAAATAGGTTTCATATTTGCGATAGGACACACAATTTGATAATCGTGGTC CATTTCTATTGCAGGTTCGAGTTGCAAATGGTGCTCCACCAGCAGGGGAATATTCTTTTGCCAAGTATAACAAGGTAAAT GCAGGTTCAATCTTCGATGCATCTGTCCATTTTTCTCATGTTTCTTTCTCGACTCAAGTCAATATGTTCTATTTACAAAT GTCGGTTCACACGCTGTGATGCAGTCTGTTGACATTACAAGATACACTGATGAGGAGTATGAAAAGCATTTGGCAGATCC TGTAGGTATCATGTCTGGACTTACAATTTCATGGAACTTCTTTCACCCGAGTTTGCTTAAATGACACCTGATGGAATTTT CAATCTATACAGAGCTAAATTTCTTTTGATGTATTGTGTTGAGGTTGCAAATTCTTCAATGATTTGTATTTTGTATTGCT AGGATTTACATTGAAAGGTCTTTGTTTGTGTATGCAACTTTAAAATTGTTTAATTGCTGGTTAGTAAATCATTTATTTTT CCCTGAAGATCAAGGAAGCTGTAAATAAAGGAGAATTTATTATCAATTTGGACGGATTTGTACATATACTCACATTTAAG CGTAACTGTGCAAACCTGTGTTATTTTAAGAGTTCGTTAGGATCCAAATACAAGGTATGGGACTTGAGTCCCACATTAGA AGTATGGAATTTTGATACGGGGTTTATAAAGCCTTGGACTCTCCAAGTACAACGGCTAGCCTTCCACCTTGTCTCTCAGC TGTAAATGAGCAATGCATGTGGTGACGCTGACATTGCAGTATTCGCCCCAGACTAGTCAAAGGGCTAGTGCATAGCCAGC CCGCTTGAGTGTGGGGGCTGTGTAGCGTGACGAGATGTTAGGGTTAATAAGGCCTTTGGCTATCCAACTACAACAGTTAG CTTTTGTGGTTGGTTCTCCCCAATGGTTCTTATTAGAGTTGAAACTTGAAAAATTGACATTCTACCAGCATATTTACGTC TATTTCTGTTATGAAGTGTTAAATGTATTTCTCTTACGTTATGTTCATTTTATTTAGAAATGGACCAAGGAGGAGACAGA TCAGCTATTTGAGTTGTGTGAGAGATTCAATCTCCGATTTATTGTAATAGCTGATAGGTTCCCGTCATCTAGAACTGTAG AAGAATTAAAGGAGCGATATTATAGTGGTATGTAATTTTCTTCTGCATTCTATAATTCGTTTTATATTATTACATACTTT GAGTTTGATTGTTTATAGACTGTAAGAGAAAATGACATATTTAAACGCATTATTTATTGATTATATTGTCCTTGCTATAT AGTATCTCGAGCTATATTAATTGCTAGGAATCCATCTTCTGGGGACGTTGCAGTGGATCCTCTCGTTAAGGTGTGATAAA CTTTTTGAACAAAAATAACTTTAAATGTGTTGTTAACTATCCACTCTCTTTCATTTTTTATTATACTGTTTTTAGTAAAA ATAAACTTGTACCTGCATTAGTGCGTTACCATGTAGATTGTAGATTTAGTTATGTGCTATTCCTCATCAATATAGGAACC ATATAATGTTTCACAAGAGTTGGAGCGGAAACAAGCTTTGTCTCTGGTCCTCTCTCAGACAAGGCGGCAAGAACAAAGAG ATGACGAGGTTTTGACTTTTCCCCCTTTTAATTAGTAAGGTTTATACATCTAGTATCAATTCATTCAGAGCAAATAAAGT TAATATAAGTATTGGCTACTGTATTTTATGCAGGTGCTTGCTGAAGCAAAAAGAATATCCGAGTTGCGGATGGCAGATAA GGTAATTTGCTAAGATCACATTTCTATGACCCTAATATATGGGTGGAGAGGAGGGCTTGTTATCAAGTTAAAAATTATTT TTCAGATTATCTGTTTCGGATTTCTTGATAAATTTCTCCTAAATTCCTGTTTATAAACCTGAATTGCTGGGGCATGTTTA ATATTACTATGCTTTATAGATAATACCGAATTTTGCTTGGTAAACTTACTTTTATTTTTTTGAGAGTGGAGTTTGAACTT TTTACTCCTGTTTCTGCCAACAGTAAATTATATGATAGTGTCAATGAATCAATTTGGACAGCAAAATTCGTGGAATAGAT GATTTTTTTTATATAAGCTGTGCATGCATCTGTACCTATGATTAGTGATATAAGGTGTTTGATTTTCTGTTTTTTAGGTC GCCAAAGAATCTGAGTTGGTTACTGCTTCAAATGCTGGTGCAGACACTACAGAGAGGGGTACTACCGGTGAAACTGCATC TCCACCAAATATCCAACCTCCACCAACTGGTGTGCCTTCCACAGTAACAATAGATAATGCATCTACACTAGCTTCTCTTC GCATTGTAAGTTAAACATAAGGTTACTAATTATGCTTGCTATATCTTGTTTCTCATCTGTTGACACTTTTATTGCCTTCC CCTGCTCATTGTCTCCCAACACGAAAATGGGAAAAAAAATGCAAGAAATATAGAATAACATGGATTCTCATCTCTACCTT ACATTGATCCAAATCTGTGAAATAGCTTATTTTTCCCCTGACAATGGTGTTTTTAAATTATTTGTTTATGTCTATATTTT AGAGCATAAACTGATAGTGGGATATATTTCAGCTTCGCGTGTATCTGAGAACCTATGCACTTGAGCAAATGGTGCAATCT GCTAGCTCATCAGCTGGACTTCGGACTATCAAACGAGTTGAGCAAACTTTGCAGGAACTTGGGGTTCGTCTATTCTCCTT GAGCTTTAATGCACTTCAGATATTTCTTTTTGTCTCCTTGATGTTTGTCCTGTAATAGTCACTGATAATATTTGTGACAC TATATGAAACCCATGCATTATTCATTTTAGGAAGGCTGAAGAATTTTCAATGACCTTTTAACTAGTAAATTGGTGCTTGT TTGAGAGTACGGTGTAGAGATTTAGAGGAACTTCAAAAAGCATTCCAGGTTCAGCTCACTTAGAACTTGACTTGGCTTGA CTGGCGTCCCTAACACTTCAATTAAGAATAAAATTATTAATGTGCTTTGTCCTGACAACATAAGCTTTTGGGATAGCTTG TAGATAACATTATCAAAGCCTCTATTTGACCAAGTGGTCATCTAATCCTTGTTTTACCCATAATAATTTAAACATAAGAT AAGTGGGCTTATGCATTGCTTACACCTTAGGCCCAAAGGACTCTTGTATGAAGGCTGGTTTGTTAGATATAATAAAATCA TGCATGTGCTTTAACCCTGTTAGACATGAAGATATCTCATTACATCTAAATTGCTTTAACCCTTTAGGATTTGTTTCCAT ATTGACTTGCATATTGTGATTTGTTTCCTTATTTTCTTAGGATTGGGTGTATAGTATTAATATTAAATAAGGATTTGTAC TTTGTGATATATAATTAGACGAAAACATATGATTCACAACACTTCAATATCAATATATTGTGTATTCTTTCTCCTCCCTC TACCGTATAGACTATATCCTAAAATTTCCACACCGAACATTTTTTTTTGTATTTTACGTAGTTAATATGTAATAGAGTAA GTAAATATGTAATTTATACTAACATGAAATTAAATCAAACTTATTTAAGCTTGAACTTGGGTCACTTAGGCTTCTCAAAG CTGGAATTTATAAACACAATGTACATGTTCAAATTGAGCTGGTATGTTTATTAAGCAAGTTGAGCTTAAGCTACCTTATC ATCATGATTATTATTAGTATTATTATTATTATGATTATTATTACTGTTATTGAGCGAAGCTCAATCACACTTGAAAGACA CTCTTCCTGATTAAGCCTTTAATTTGTTTTGACTCTGATTGCAGGTCAATTTGAAACCAAGGGTTCCCACGAAAGGTGTT TGTGCAGAGCATCTTGAACTAAGAAAAGAAATACTAACACTGCTGAATCTTCAGAAACAGGTATATAGTATATGTGAAAT AAATTTGCTTGTTTCTGTATTATGAGTTGTTTTACTAGTTGGGTTAGCTTGAAATATATACCACTATAATGCCATATTTG CGTATAGGATTGACAGAGTCTACATTGGCTTGCTAACTCACTTCCAATTTCTGTCTTAATTTGTGTCAGCTGCAATATAA GGAGGCTGAGGGTTCGTCTTTTCGTGATGGGTCATACAATGAAACACCAGGAACACCAAAGGTTAGAAATTAAGTTTTTA TTTTGGTACTTTCTCCTCTTGTTTTTATGTTTTAGACTTGTGATTGTTTAAGCATGCTATTATTTTTCTCAAACCATTAG TTTGTGATTCTGAAACTTATGACAGCGTTTGCCTCGTGCTGGGGATCAGGATCGGACATTTGTTCCTGACAGTACAAGTT TTGGAGGTAGTGAATTTTGTTTGCACTTCCTGTCTAATTTTCTGTGACAGGATTTTAATCTACATTTTATTAAAAACTAA ACATTTATATTACTGGTTTCAGGGGAAAGGATTGGCAAAAGGGATCAAAAGCGCAAGGTATGGTATACACATTATTTTCT GGTTCAATTATTTTGTTGTTTCTTCCGACATGCATTTGGACCATTGCCATAGTGCATTGTGTTAAACTTGGAAATTTTAT TTGTAAAGGCGCCTGGACGGCTTTCAGAAGCTCCATCACCAGTCCAATCTAAAAGACCTAGAAAACAGAAGGCCTCAGAT CTTTAGTTCCTCTAGTAAGTGCTTAAAATTACTGTTGATATTTTGTTTAGGTTTGTACAATCTAATGTGCTTCAACGTTC TTCTACTGCCTTTTTTTCAGTCCTATGTAATTACTAAATGACTTTTCTGTTTTGCATATTTATCCATTAGGTGGCGAAAG TGGATGTTTTAATTCGAAGGTTCCTTTAATAGGAATTATTGTTAATATTGTTGTAAGCAGCAGTGAACTCTAAGCACCTG CAAATTCTGATTGTTGTTAGTTTCAACTAATTGCTAAACGGAGCGATGAGGTTGGCATCTTCATGATGTATGGCCCCATT GAGAAGCTGAACTTTATTTTTTGTGATGGTAAAGCTTTGTAACAGTATTAGGCATATGTAAATTTTAGGATTTGTGAATA TTCCAGATGTCTGCAGGAGCTTAAATTTTCTGTCAGAACAGATTTAGCTCAAAACAATTATTTCGGGATGTAGAAATTGG TTTGTCTTGGGAAGCTGATGGGAAAACCCCATGCCTTAGGGATGAGCAAATTGGAGAGTGAATATAGAACCAAAACATGC AAATAATCTTTCATTTTCTCCCTCATACCATGATCAACAGTTTTTTTTTTTTTTTTTCAATATCCATTGCAACATTGAAA ATTTTCTTAACTATCCAAGATAATTGAAGGGTTTTATCTAAATTGTCACGGAAGTTATGTTAAATTATGGGAGCAGAGAA CAAACGAAGTTTGGAATAACTAATTGATGGTCTTATTTGATCAGAGCATATCTCTCCCCATCATTTATTTTGAGCAATGC TC
CDS sequence (LotjaGi5g1v0242300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGGATGCGAAGGAAATCCTGGGATTGCCCAATAGTTCCTTCCTTCAAGCTCAGGAGGAGAAGAACTCTCAACC TCAGAGAAAACCAGATGGCATGTCGAGGGAGGTTTATGCGCTTACTGGTGGTTTGACACCTCTTATGCCTACCATTGATC CCTCTCAATTGAAGAAAAGGCCACCCTCAGATGAAAAGGTCAGTTGGCAATGGCTTCCGTTCACGAATTCTGCCCGTAAA GATGATCTTCACCTTTACCATTGGGTTCGAGTTGCAAATGGTGCTCCACCAGCAGGGGAATATTCTTTTGCCAAGTATAA CAAGTCTGTTGACATTACAAGATACACTGATGAGGAGTATGAAAAGCATTTGGCAGATCCTAAATGGACCAAGGAGGAGA CAGATCAGCTATTTGAGTTGTGTGAGAGATTCAATCTCCGATTTATTGTAATAGCTGATAGGTTCCCGTCATCTAGAACT GTAGAAGAATTAAAGGAGCGATATTATAGTGTATCTCGAGCTATATTAATTGCTAGGAATCCATCTTCTGGGGACGTTGC AGTGGATCCTCTCGTTAAGGAACCATATAATGTTTCACAAGAGTTGGAGCGGAAACAAGCTTTGTCTCTGGTCCTCTCTC AGACAAGGCGGCAAGAACAAAGAGATGACGAGGTGCTTGCTGAAGCAAAAAGAATATCCGAGTTGCGGATGGCAGATAAG GTCGCCAAAGAATCTGAGTTGGTTACTGCTTCAAATGCTGGTGCAGACACTACAGAGAGGGGTACTACCGGTGAAACTGC ATCTCCACCAAATATCCAACCTCCACCAACTGGTGTGCCTTCCACAGTAACAATAGATAATGCATCTACACTAGCTTCTC TTCGCATTCTTCGCGTGTATCTGAGAACCTATGCACTTGAGCAAATGGTGCAATCTGCTAGCTCATCAGCTGGACTTCGG ACTATCAAACGAGTTGAGCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCCACGAAAGGTGTTTGTGC AGAGCATCTTGAACTAAGAAAAGAAATACTAACACTGCTGAATCTTCAGAAACAGCTGCAATATAAGGAGGCTGAGGGTT CGTCTTTTCGTGATGGGTCATACAATGAAACACCAGGAACACCAAAGCGTTTGCCTCGTGCTGGGGATCAGGATCGGACA TTTGTTCCTGACAGTACAAGTTTTGGAGGGGAAAGGATTGGCAAAAGGGATCAAAAGCGCAAGGCGCCTGGACGGCTTTC AGAAGCTCCATCACCAGTCCAATCTAAAAGACCTAGAAAACAGAAGGCCTCAGATCTTTAG
Protein sequence (LotjaGi5g1v0242300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMDAKEILGLPNSSFLQAQEEKNSQPQRKPDGMSREVYALTGGLTPLMPTIDPSQLKKRPPSDEKVSWQWLPFTNSARK DDLHLYHWVRVANGAPPAGEYSFAKYNKSVDITRYTDEEYEKHLADPKWTKEETDQLFELCERFNLRFIVIADRFPSSRT VEELKERYYSVSRAILIARNPSSGDVAVDPLVKEPYNVSQELERKQALSLVLSQTRRQEQRDDEVLAEAKRISELRMADK VAKESELVTASNAGADTTERGTTGETASPPNIQPPPTGVPSTVTIDNASTLASLRILRVYLRTYALEQMVQSASSSAGLR TIKRVEQTLQELGVNLKPRVPTKGVCAEHLELRKEILTLLNLQKQLQYKEAEGSSFRDGSYNETPGTPKRLPRAGDQDRT FVPDSTSFGGERIGKRDQKRKAPGRLSEAPSPVQSKRPRKQKASDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 2 | 441 | 440 | 1.1E-125 | ||
| Gene3D | 98 | 185 | 88 | 9.7E-34 | – | |
| Pfam | 101 | 175 | 75 | 5.7E-31 | ||
| SUPERFAMILY | 125 | 175 | 51 | 5.15E-7 | ||
| SMART | 125 | 174 | 50 | 4.5E-8 | ||
| CDD | 129 | 171 | 43 | 9.43431E-19 | – | |
| MobiDBLite | 246 | 281 | 36 | - | – | |
| Pfam | 247 | 378 | 132 | 3.6E-7 | ||
| MobiDBLite | 250 | 268 | 19 | - | – | |
| MobiDBLite | 371 | 446 | 76 | - | – | |
| MobiDBLite | 410 | 424 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | NuA4 histone acetyltransferase complex | A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). | ||
| Biological process | Histone H4 acetylation | The modification of histone H4 by the addition of an acetyl group. | ||
| Biological process | Histone H2A acetylation | The modification of histone H2A by the addition of an acetyl group. | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0242300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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