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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1603840 |
| Transcript ID | Lj3g3v1603840.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 445 | 445 | 6.70E-162 | ||
| MobiDBLite | 1 | 38 | 38 | – | – | |
| PANTHER | 1 | 445 | 445 | 6.70E-162 | – | |
| Pfam | 101 | 174 | 74 | 1.70E-29 | ||
| SMART | 125 | 174 | 50 | 5.80E-06 | ||
| Gene3D | 127 | 170 | 44 | 2.20E-06 | ||
| SUPERFAMILY | 128 | 170 | 43 | 2.94E-06 | ||
| CDD | 129 | 170 | 42 | 5.34E-18 | – | |
| Pfam | 227 | 378 | 152 | 2.40E-07 | ||
| MobiDBLite | 246 | 282 | 37 | – | – | |
| MobiDBLite | 371 | 446 | 76 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | NuA4 histone acetyltransferase complex | A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). | ||
| Biological process | Histone H4 acetylation | The modification of histone H4 by the addition of an acetyl group. | ||
| Biological process | Histone H2A acetylation | The modification of histone H2A by the addition of an acetyl group. | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj3g3v1603840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1603840.1, powered by CORGI.
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