Domain Predictions — View

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PTHR20856:SF20

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0053899.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase beta subunit [Lotus japonicus] gi\|13518436\|ref\|NP_084796.1\|	Domains G3DSA:2.40.270.10 G3DSA:2.40.50.100 G3DSA:2.40.50.150 G3DSA:3.90.1100.10 IPR007120 IPR007121 IPR007641 IPR014724 IPR015712 PF00562 PF04560 PS01166 PTHR20856 PTHR20856:SF20 SSF64484 cd00653	16
Lj0g3v0053909.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase beta subunit [Lotus japonicus] gi\|13518436\|ref\|NP_084796.1\|	Domains G3DSA:3.90.1100.10 G3DSA:3.90.1110.10 IPR007642 IPR007644 IPR007645 IPR015712 PF04561 PF04563 PF04565 PTHR20856 PTHR20856:SF20 SSF64484	12
Ljchlorog3v0000370.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase beta subunit [Lotus japonicus] gi\|13518436\|ref\|NP_084796.1\|	Domains G3DSA:3.90.1100.10 G3DSA:3.90.1110.10 IPR007642 IPR007644 IPR007645 IPR015712 PF04561 PF04563 PF04565 PTHR20856 PTHR20856:SF20 SSF64484	12
Ljchlorog3v0000380.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase beta subunit [Lotus japonicus] gi\|13518436\|ref\|NP_084796.1\|	Domains G3DSA:2.40.270.10 G3DSA:2.40.50.100 G3DSA:2.40.50.150 G3DSA:3.90.1100.10 IPR007120 IPR007121 IPR007641 IPR014724 IPR015712 PF00562 PF04560 PS01166 PTHR20856 PTHR20856:SF20 SSF64484 cd00653	16
LotjaGi5g1v0143500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp\|Q9BBS9\|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr\|A0A1C7D303\|A0A1C7D303_9FABA DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC	Domains G3DSA:2.40.270.10 G3DSA:3.90.1800.10 IPR007120 IPR007641 IPR015712 IPR037033 PF00562 PF04560 PTHR20856 PTHR20856:SF20 SSF64484	11
LotjaGi5g1v0143500_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp\|Q9BBS9\|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr\|A0A1C7D4C0\|A0A1C7D4C0_ROBPS DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC	Domains G3DSA:2.40.270.10 G3DSA:3.90.1800.10 IPR007120 IPR007641 IPR015712 IPR037033 PF00562 PF04560 PTHR20856 PTHR20856:SF20 SSF64484	11
LotjaGi5g1v0143500_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-directed RNA polymerase subunit beta; TAIR: ATCG00190.1 RNA polymerase subunit beta (ChrC); Swiss-Prot: sp\|Q9BBS9\|RPOB_LOTJA DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr\|A0A0F6NF16\|A0A0F6NF16_LATLI DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0143500_LC	Domains G3DSA:2.40.270.10 IPR007120 IPR015712 IPR037033 PF00562 PTHR20856 PTHR20856:SF20 SSF64484	8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF64484	SUPERFAMILY	1	14.29