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Lj0g3v0053899.1

Overview

Field Value
Gene ID Lj0g3v0053899
Transcript ID Lj0g3v0053899.1
Lotus japonicus genome version MG20 v3.0
Description RNA polymerase beta subunit [Lotus japonicus] gi|13518436|ref|NP_084796.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF64484
2 596 595 1.59E-208 –
PANTHER
PTHR20856:SF20
3 123 121 0 –
PANTHER
PTHR20856
3 123 121 0
IPR015712
Gene3D
G3DSA:3.90.1100.10
23 111 89 7.40E-25 –
CDD
cd00653
46 591 546 0
IPR015712
Gene3D
G3DSA:2.40.50.100
113 183 71 2.40E-26 –
Pfam
PF00562
116 514 399 1.30E-121
IPR007120
PANTHER
PTHR20856:SF20
139 597 459 0 –
PANTHER
PTHR20856
139 597 459 0
IPR015712
Gene3D
G3DSA:2.40.270.10
184 210 27 8.10E-71
IPR007120
Gene3D
G3DSA:2.40.50.150
217 348 132 5.90E-45
IPR014724
Gene3D
G3DSA:2.40.270.10
349 492 144 8.10E-71
IPR007120
ProSitePatterns
PS01166
352 364 13 –
IPR007121
Pfam
PF04560
516 591 76 9.00E-22
IPR007641

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0032549
Molecular function Ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0053899.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0053899.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.