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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765900 |
| Transcript ID | LotjaGi1g1v0765900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133898031..133901120) extracted from Lotus japonicus Gifu genome v1.2.
TTGATTTAGTTTTGAAGGCTAACAAGAATAAAATTTGCGATTGAAATGCATAAAAGAAGGTATTGACTCCTCACCTCTTA TAAAAAAGAGATCAACACTACAGTGTAAGCATTAAGCAATCATAGAGGGTTTGGTTTGGGTTTGGAACTCCCTCTCTCTT TCTCTGCTTTCAAACACAACATCGTCGACGACATCACAAACCACCACAACAACTTGAGCAATCATCATGGTAAGTACTTC TCTCTCACTCTTTTCATACGCCAACATCGAAAACCTAGATCCCTAACCTCGTACTCTGTCTATCTTTTTTTGTTCTTTGG AATTTTTAAGCGGAAACCCGAATGGGAATTCAACTCCTCCCAACTAACCCTAGGTTGTTGTTCTGAGTGATAATTGAAGC AGTAGGGTTACCATTACTGTTACTGTTGATTCTTACCTTCTCCTTTTACTTGTTTTTGCAGCTTCCTCTTTCCCTTCTCA AGACTGCTCAAGGCCACCCTATGGTAATTCATCCTTCTCTATTCCACAACTTTTTCTGTTTGATTTGTAACTTTGCTTTT TTTTTTATTTATAATTAATTTATGTTTTACTTGCTTTAATAGTTGGTGGAGCTGAAAAACGGGGAGACATACAACGGGCA TTTGGTTAATTGCGATACATGGATGAACATCCATCTTCGAGAAGTCATTTGCACCAATAAAGTAATGTTTTTTTATGACT AGCCCTTGTAATTTGTTGCCTGCTTGATTGTTTTCATTACTAAGTTTGATTCAAATTTGCCAATGTAGGATGGAGATAGA TTTTGGCGGATGCCTGAGTGCTACATTCGAGGCAATACAATTAAGTACCTTCGAGTTCCTGATGAGGTATGAATTGGTTG TTAGGTTTTATTTTTATCTTAAAAAATCTTTTGGTTAACTGGTTGTGAAGAGGGTGAGGCTTGGAATAATGGTAGAGTTT CAGCCTTGTGATCTGGTGGTCACGGGTTGAAGTAGTGGGCAATGCCTCACCTCATGCTTGAGTGTTTAAGGCTGTGCACG CCTGATATAATGGTTCCATTGGGCTGCATATTTATTTTTTAGTGAATAGGTTTACAGTTTGTTGAGTAATGTCTGAGATG TACATACATGAGACATACATTTATCCACTAATCGTGCTTTATTTTCTGTTATTGTAGGTTATTGACAAAGTTCAGGAAGA AACCAAGAGCCGTACTGGTAAGAACTGTTTTGACATCTAGTTGGTCTTGAGAATTTGAGTATGAGTGTCATGTGGGTGTG AGTAAAAATGTCCTGCATTCAATAGGAATGGATAAGTTGAACACAGGGTAAAGTGGAACCACTCATGAATTTAATGCCTT AAGGTTTTGGATTGAGACATATTCATCAGGTTCATTAGAACAGATTTCCGTAGTGTCACTCCCTATAATTAACCCCAAAT GTTTCCCCTGATAGAACTGACAGTTGGTTGTTCATCTAGATAATTGACTAGGTGATTCATAAGGAGGAAAAAAGAAAGAT TGCTATGTTAGTCCTAATAAGGATGCATGTTATTTTGTTCTGATTGATTCTGACAGTTATAGATCACATTTATTTCTTTT ATAAATCAGCAAATAATGATTTTATATTGCCACTGTGAATGAGTTAAATCACCCTCATATTCTGAACTGCCACTCAGGCA GCCTTGCAATGACAAAAATAGTTTTTCTGATCAATGTCATGTTTTTCAGATCGCAAACCACCTGGCGTTGGACGTGGGAG GGGAAGAGGAGGTAGGGAGGAAGGTGCTGGTGGGCGCCCGGCAAAAGGACCTGGGCGTGGTTTTGATGATGGTGCTAAGG GACCTGGTGGCCGTGGCAGAGGCGGCTTAGGTGGAAAGCCTGGTGGAAGTAGAGGTAAAGCATAAATGTATTCCTTTTAT GTATTATTACCACCTCTATCCCTCGAATTCACCATGTCAAAGTTCAAAGGATTTCCTGCTATTGTGGTTTTTGTTTTGAC ATGGACTAGATGAGCTCCTGATCAGCAAGACCTTGCTTCAGTGTAGAATTATCTTATTATTGAAAGAACACGATACTACT GATTTAATTTGCTGGTTTTAATAATAAAATTTATGATTGGAACTTGGAAATGTCTTGCATAACAATTCTGCATACTTCTT TGTATAAAATAGCGGCTTTAAGTTAAATCTTGTGAGTGAATATCAACTAATTGACTTGCTTCTTTTGGTAGGTGCAGGGA GAGGTAGAGGTTGATTCTTACAAGTGATGCGGAGTTCTTGTCTTTCATGCGTACCAGCAGCAGACTTCACTGCACCCATC TTTACTGTGCATCCTTGATTTTACTTTCCAAATGTTTTTCTTGTGTTAATGGCCTCTCTCACTAAAATATTAGTGCTATA ATGTTCCTCAAGGATGGCTTCTAATCCCGCTGGCAAACAAATGATGGGGCAATCTATCTTTAATTTATATTTAGCCTTGG TATATTTAAGGGTGTTCCTTTGACATTGTACATGAATTGAAACGTTTAGGGGTTTTTTAACTCATGTTCGATTAATTTCC AAGGCAGTTAAAGATTCTCCTTTTCTTTTTTGTTAAGCTCTCGTGTTGTATGTTGATTCTGGTCTGTTTTCAAGGCCGTA GTAACCATAAAACTGCTTAAAGTTGCTTGCAGAATCTAGCTGTATCTGCAATTTGGTTCCATTGTTTGTGTTTTGGGGAG AGGGGGTACATCTCGCGTATTGGCGTTTGTAGTTTCGATTTATTTCGACTGATTAATGTTTACCCTTGGGTTGGGGCACC CCTAGTGCCCTCTATCTAATATGATTTTGGTTTATTTGTCCAAGTTGATCACCTAGAGTGCAAAGATTCTCAGAAAAGTA AGCATGGGAATACATCATTCTTGCATGTGAACCAATCCAAACAAAACCGACAAACCGATAAAAAAAAAACCGAAATCCAA TCAAACCGAAAACCGAACGGACTGAAAATTGAAAAAACCGAAATTATTTATTGGATCGGATCGGATTTTGGATTTGATTT CCAAAACCGAACCAATCCAATCCAAACCGAACATTCACAAATATGTATAA
CDS sequence (LotjaGi1g1v0765900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTCTTTCCCTTCTCAAGACTGCTCAAGGCCACCCTATGTTGGTGGAGCTGAAAAACGGGGAGACATACAACGG GCATTTGGTTAATTGCGATACATGGATGAACATCCATCTTCGAGAAGTCATTTGCACCAATAAAGATGGAGATAGATTTT GGCGGATGCCTGAGTGCTACATTCGAGGCAATACAATTAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAG GAAGAAACCAAGAGCCGTACTGATCGCAAACCACCTGGCGTTGGACGTGGGAGGGGAAGAGGAGGTAGGGAGGAAGGTGC TGGTGGGCGCCCGGCAAAAGGACCTGGGCGTGGTTTTGATGATGGTGCTAAGGGACCTGGTGGCCGTGGCAGAGGCGGCT TAGGTGGAAAGCCTGGTGGAAGTAGAGGTGCAGGGAGAGGTAGAGGTTGA
Protein sequence (LotjaGi1g1v0765900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQ EETKSRTDRKPPGVGRGRGRGGREEGAGGRPAKGPGRGFDDGAKGPGGRGRGGLGGKPGGSRGAGRGRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 83 | 83 | 3.7E-38 | – | |
| PANTHER | 1 | 145 | 145 | 7.5E-90 | – | |
| PANTHER | 1 | 145 | 145 | 7.5E-90 | ||
| CDD | 2 | 77 | 76 | 3.53547E-59 | ||
| SUPERFAMILY | 3 | 132 | 130 | 2.77E-33 | ||
| SMART | 5 | 71 | 67 | 1.4E-20 | ||
| Pfam | 6 | 70 | 65 | 6.7E-17 | ||
| MobiDBLite | 79 | 149 | 71 | - | – | |
| MobiDBLite | 79 | 107 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0765900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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