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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0474900 |
| Transcript ID | LotjaGi3g1v0474900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89156434..89159563) extracted from Lotus japonicus Gifu genome v1.2.
GGGGTTAGCGCTTGTAAACTCCAAATAATTGAAACAACACTCGCTTCGTGTTGTGCTATTTTTGAAAGAGGGAAAAAGAG GGTTTAGGGTTTTGTGAGCGAGCGAGAAACGACACACAGTACACGATGAGCATGAGCAGGAGCTTGGGGATTCCGGTGAA GCTTCTCCACGAAGCGTCGGGTCACGTGGTCACGGTGGAGCTCAAGAGCGGAGAACTCTACCGAGGCAACATGATCGAGT GCGAGGACAATTGGAACTGTCAACTCGAAAGCATCACCTACACTGCAAAGGTACCCACCCTTATTTTCTTTTTCTCCATA CATTTGGTGGGATTTGGTGAATCACCGATTCTGGATTCATGGGGAGCCTTTGAATTTGCACTTTTTAATTTCTGGGTTTT TAGGGTCTGTTTGGCTTCCAGATTTAGGGTCTGAATTTGCCAGAGAGAGTTGTGATATTATGTGAAGAATTAAGAAAGAC ACTATTTTCAATTTGATAACAATATGTGATAATTGGCTAGAGATGTTAGGAATATAACTATTCATGTATCCTTTACCTAA TATAGCTTATGTTTTTTTGGGATAATTGGTTTAAGACATGACTAATGATTCGTCTGGTCTAGTGACTCGACATGAGTTAT GTGCTTCCTAATTTGTGATTTTGCCGATTACTCCTGAATTGGAATGTTGGTACGCTGAGAAAAATTGCTACTGCAAGAAA AGAGTGTTTGCATTGAGTGAATGAGACTATGAGATGCGAAAGAGTAAAGATGAGGGGATTGATTGCGGAGAGAGTAAAGT TAAATGTGGTTAGAGATAGAGAGACTGGGGTGAAGATGGTGAAAATTGAAAAGAAAAGGAAATGTTTTTGGGATTTTCTA AAATGCTGGTGCCTGGTGGTGGTTAAAGAGTGGAAACATTGGACACTCTTGTATTGTTTCCAACATTTCTAAAAGTAAGA GCCTTTTTTCCTGAAATATGAAGTGGATGATTACCCAAACATGTTGTCTATGTTGCTTCCTGTGTTCAGTGAAGATGTAA GCAGGAAATAGTCAAACCAAACGCAACCTTAACGTCTCCAATTTTAAGTGTATTTGTTAAAAACTTAAATGCTCATATTA GTTGCTGATATTTGCTTAATCTTCCTCAGGATGGAAAAACATCACAGCTTGAGCATGTGTTTATTCGAGGCAGCAAAGTC AGGTATGAATCATATGTTACTTTGTAACAATAATTTTATTGTCCAAATAGGGCTGTGAATTATATATTACTCCATAAGTT TATAATTTTATATTTCAAATGAGTTCATTGTATATTATATTTCTGTAAGGATGACACTTTGATACGAATTCAACAGGTTT ATGGTCATACCAGACATGTTGAAGAATGCTCCTATGTTTAAGCGTCTTGATGCAAAAATCAAGGTACCTTCTTATTTTCA TGTGATTTAGTTCTTGGTATTAGTTTTATGTGTGCTTTGTATTTCATGCTTTTTAAATCTCTTGAAGGGCAAAGGTGCAT CTCTTGGTGTTGGTAGGGGAAGAGCAGTTGCAATGCGAGCTAAGGTATTTACTTAAAAAAACAGAGTCTATTAATATATA TAGTCTTAAAACATTGCTTGTTCATTGTCCTGCTAGTTGAAGGACATACCAATATGTTATGTGGCATAACTCCAAATGTT GCTTGTGCAGGCTCAATCGGCTGGCCGTGGAGCTGCACCAGGAAGGGGTGCACCACCAGTGCGGAGGTGATCACAAAATC TATAGTCTCTGTTGTCTCTATTTTCCCTGTTTGTTAAGCATGATATTTAGTTTGTTGAAGGAGTTCATGAGGGAAAGAAA TTCAAATAGAAAGTGCTTATCCAGATTCCGTAGAACACTGACTTTATGGACAGTACTGAATGCCAAATTTATTCTCTTCA CCTCCACTCTTGATCTAGTATTGTTTACCTGGCTGGTAGAATTTTCTCTAAGGCAGTGTTTGGCCACTTCCAAACTGGTT TATAATGGTACAAAATAGAATCATTAACCAGTTATACTGGGGCAGTTTTGCAAATCTGAAAGCTGGTTTATAACTATATA TAATGATATAAATTTAGGTTATTTTACAACTAGTTTTAATTTGTTTTAGTTTGGTTGAAGGGGAATGCTAGTAACAAGCT GTTCAAAACTCTCTCTTGAAACATTTTCGTTATTGGGTGAAATCCAATGCGAGTTCCACTTAATAACTTGCTAGCATTTC ACATTCTTTAACTTTCATAAACCATATCTAAAATGAACTAAGGCTGGGCCGGGGTTTGCATAAATAGAGCTAACCTACTT ATAACTTTCATAGTCTGAGTCTGGCTTGTTGTCATATGCTTTATTGTTAGCTTTGGCTTGGTTTACTTACAAGTCTGGTT TGGCTTGGGAAGTCTGTTTGTTAAAGTAACATCTCAGACACTTTTTTTGTTGAAGTAACAAGTTGCCACTTCAAAAAAAA GTGCCCCGACATATGTTATTTTCCTATTTTCATACTTTGGTAAACCATACAAGGTCTAAGACTAAGATACTCTAAGATGC CAAAGACCTCATTATTGGAGGCAAACAAAAGGAGACCAACGTCTGGTCCCAATAGACAACGCCTTGAGTCATTAACCATT ACCTCTATCTCACCCTATTGACTTTTCAAGTGTGGTCGGGTCAACGAAGCTACATGGTTACTAGCCGGTAAGTAGTCAAC CAATGCCTCATCAAGTCATTGTATTGACTCCAAAGTCCAAACAATTAATACGACCTTTCTTCCGTACCAAAGGGACCCCA TCAATCAGTCAAATATGAATTCCTTTTGAAATGTAGAGGTACACTTTTGAGGCATCCAACTGTTTGTTAATTATGTCTGG CTTTGTTGGTAACATCATGAGTCTAGTTGACGACGTGTTTAGTACTCCTTCTGCCCCATAAAATTTGTAGTTTTTGGTAT CATTTCAATATCTCAAATAATTTGTTGTTTTAGGATGTCAATGCATTTTTTCCATTTTTTTCTACCTATACCCTCATTTA ATACATTTTCTCTAATTTATTACATTTCATATTAACTAACCACAACTTTTCTCTATTAATTACATTCTTCTCTATCTAAG TATAATTTAA
CDS sequence (LotjaGi3g1v0474900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATGAGCAGGAGCTTGGGGATTCCGGTGAAGCTTCTCCACGAAGCGTCGGGTCACGTGGTCACGGTGGAGCTCAA GAGCGGAGAACTCTACCGAGGCAACATGATCGAGTGCGAGGACAATTGGAACTGTCAACTCGAAAGCATCACCTACACTG CAAAGGATGGAAAAACATCACAGCTTGAGCATGTGTTTATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATG TTGAAGAATGCTCCTATGTTTAAGCGTCTTGATGCAAAAATCAAGGGCAAAGGTGCATCTCTTGGTGTTGGTAGGGGAAG AGCAGTTGCAATGCGAGCTAAGGCTCAATCGGCTGGCCGTGGAGCTGCACCAGGAAGGGGTGCACCACCAGTGCGGAGGT GA
Protein sequence (LotjaGi3g1v0474900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDM LKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQSAGRGAAPGRGAPPVRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 3 | 132 | 130 | 1.4E-71 | – | |
| PANTHER | 3 | 132 | 130 | 1.4E-71 | ||
| Gene3D | 5 | 88 | 84 | 2.1E-34 | – | |
| Phobius | 6 | 14 | 9 | - | – | |
| SUPERFAMILY | 10 | 126 | 117 | 2.29E-27 | ||
| CDD | 10 | 79 | 70 | 5.37946E-47 | ||
| SMART | 12 | 77 | 66 | 8.2E-17 | ||
| Pfam | 13 | 76 | 64 | 2.4E-15 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 133 | 114 | - | – | |
| MobiDBLite | 114 | 133 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi3g1v0474900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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