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Sm_D3
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] gi|502139973|ref|XP_004503997.1| | 14 | ||
| – | Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula] gi|357519697|ref|XP_003630137.1| | 10 | ||
| – | Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900 | 17 | ||
| – | Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3T1G1|I3T1G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0405100 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |