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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0728800 |
| Transcript ID | LotjaGi1g1v0728800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130040223..130043950) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGTTATGGATGGAAATAAATGGGTGCTCATGTTAGCACAAATAATTTTTAGGGTTTTACTAAATTTTAGCTTGCAC CTCGACCTTGTACTATAAACGCCACTGTCATTTGGAGTTGGCCCTGAGCAGCGAGCGATAAGCGAGTTTCCTCTGCGACA GTGTTTCTCGTCTTCTCCTCTTCTCCGCCACCATGAAGCTCGTCAGGTATCACCTCCTCCACCGTCTACTCCTCTCTCTC TCCGTCGTTTCCATTATTTCTCCGCTTTCTTTTTCAACTAAATGCTTTGTTCGAACAGGTTTCTCATGAAGTTGAACAAC GAAACTGTTTCCATCGAGCTTAAGAACGGGACTATTGTCCATGGCACCATTACAGGTACTCTTCATTCACTTTTTAGATT GTGTTCTCACTTCGTTGCTGTTCTTCTTAAACCCTAGGCTTTCTCGGCGTTTGAACATTTTAGGGTTTAGCTTCATAGTA TTTAGAATTCGATGTGCTCACTGGATTTCCAATTGTTAAGCCTAGAGTAATTTTTGTCAGCACACTCTAAATGTTACCCT AGAATTTTAAAATCTGCACTTGAAAATTATGTATTTTTTCTTGTGCATAGCATTAAAATGACGAGATTGCTCATACTAGT TTCATATGAAGGGATGCTTGTCAGATCTCATATTATGCCTCTGCTATATGGATTTCAATTTTCATTGATGTGATTGGGTA GAAAAAGGAGAAGCAGGGGGCAGATTTTGCTAGTTTGAATTGCCTTTGCACATTCTACCTTAAATGCCTGTAGTTATGCT TGTGGTGCTATGTATGGCAGAGGGTAGCGCTCTAAGGGCTCACCGCTATTTTCCGCTATGAGGGCTTGAAATAGCGGATT TTTGGCTTTCCGCTATTTTCCACGATCCGCAATTAACAACACTGTGTATAAGGTGCATTTGGAAGAGCTTACTTAATGTC ATATTATAGTATAAGCAATTAGGCATGTTTTGGGTTAAGCTTGTGACAATAGCTTATGACCTTTCACTTATCTATAAGCT CTTTTGAGCTTATTTTGATAAGCTTATCAGATTAGTTTATGTACAAGAGCTTATAAAATATACATACATATAATATAAGC ATTTTGGAGCTTACTTAAATAAGCTTATAAACAAGCTTTTGTGTGAGAAGTGCTTATTTATTGCCATAAACACTTAGTTA AGCTATTTACCCAACTCACTAATATTTAGATGGATTGAATTTTAATAAATTCACATATGTGAGTGAAATATGATATCAAG TGTGTGCTGCTGACCAAGGTAGGTTTATCATAATCAACAATCACTTATCTCCATCCCAGGAAAAAAAGGTCATAATCTTG TACCACTTACAAAGTCTTGTACAGAATGATAAGGATTGACATCCTTTTCTATTTCTCCCTTTGACTTATTTGCAGCTTTC CACGAGATTTCCACATTTAGTGTATGAGTTCTTTACTTGTTATTCCTATGTTAGCAACTTTCTGTCTTGTCCAGGTGAAT AGCTAATTAGTAATTCCTGGTTATCTTCTTAATAGATTAATAATGTTCGAAATATCTCTTTGTAGCTAAACTTGATATAG GATAGATTTTTTTTCTGGCTTTCTTTTGGTGTTCTGCTCTAGGTCTTTTGAATAGAGCTGCTATCTTTGACATGATAGAA AGATTGAAAATCTTTCCTGCATTGTACTGCTTCTTGGTTCCTTCATGGTCATACCTTACATATGGAATGCGATATTCCTT GTCTTCTTTGGTTTTGAAATTTGAAACAATGTCTTGCTCTCCCATTGTTTGTGCTGTCCCTCTTTTCTCCTTAATAAGAT TTTTTTATGATGTTTGTAGTAAAGTAGTACTAATTACTGTTGAAACTCTAGACTTGGAATAGTAAGGCGTTGTTTCTTTT CTGACATTTTACTTGGGCGGAAAATCTTTGCCATTTTACTATATGGCAGTAATATACCTCCTAGCCATTTGCACAAGTGT GCTTTATAAAACTTATGTAGTTTATAATTCCCATACAGCATCTGCATCGTTTCGAAGCCTGTCCTTAATGCCTGTTCCGT TCTATGATACAGATTACAAGCCCCAATTTAGCCTTACATTTTACCTAGGACAACATGGCAGAATTGCAGAATTCCAATTA AACCCCATCCACCCTGTTTTGTGAAATTTGCTTTGGAACAATAATCTGGATATAGTTTGATGTGGTCACAGTAAGAAAAA CTCGAATGTTATTACATCTGTTGTGTTTGGTTGTATTAAAATTTAGATTGTTCGTAGGGTAGGTGGCCCTAGCATCATGA ATAAATAACAATCACAATATTTTATGTAGTGTTTAATTAGTGGACACTTGAAAGTTGACGTGGTTAATGAGAATAATGAA TCATTGTATTATTGTTGTTGTTGGGCAACATATTGCTACTATTATCCCTACACAGTCAAATTGAGCTCGAAGGAATTTCC TTGTCTTTAACTAGTTAATACATATTAGCTCATGTCTGAAGAGCTTGCCATTTAGTATCTCAAAGCCTTCTAATTCGTTG GATGGGATGTGTTTTGAATCATTAGCTGTACTGATCCTTGGACTTTCTATACTGCAGGTGTTGATATCAGTATGAATACA CATTTGAAAACAGTTAAACTAACCCTGAAAGGGAAAAATCCAGTTACTTTGGATCATCTCAGTGTAAGGGGCAACAACAT TCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGACCCCTAGGGTCAAACCTAAGAAGC CAACTGCTGGGGGTACTGTATATTATTTGACTGTCAATATTTGTCATACTGATCCATTATGTTTGGGCTGTTTATATCTG TGGATTTCTGATTTTCATAGTTTTTAATTTTAATTACAGGGAAGCCTTTGGGACGAGGACGGGGGCGTGGACGTGGACGC GGCCGAGGTCGTGGTGGCCGTTAATTTGCTTGTTACAATTTTTGGAATTTGGCTTTACCTTACTCCCTTTAATGTAGGGA AGTTCTATGGGAGGATTTTAAAGACATTGAAGGAGTGTTATTGTTAAGTAGTCATGTTGACTTTACTAATGTCGCTATTT TCTTACACCAGTGCTTTGAAGTTGTAGTGTATATTTCCTTCCAGATAATGCCTACTATCTCTGATCAGAAAGAAACTGCC TACATGTGTGGTTTGTGGGATAAGCTAAAGAGACTTAGGAATTAATGATCATTGCCCTTGGTCACAGTGTTGCTTGTGTT TTTCTTTTTTCTTTTATTTTTGGGTCGATTGATGGTTTTGGTTAAATGTTTGTGTTAAGTTCAGTTGACACTAAGTGTTG CCCATGAACGAATGAATTCTTGAGTGGGCATGAGGTCGCCAAGTTCTCTGGCAGCACATGATCCTCCACATGATTGCCAT AAAAGGCTTTAGTTGTATCCGGCCGCCAAATACTCCTTCTGCCATGAGGCCCTCTAATTGGGTTTCCCTAATTTGGAACT CGCCTTTAGCGATCCTGAAGCTGCGTCACCTCCATCCAAGATCTAGTCCTCAAGTATTGTAGTAGTGTTACAAATGAACT AGAATATTTGAAAAATTAAATTAATTTCATTCTTTTAGTTATTCAAATTATTTATAAGTTTATTTCATAAAATTTGATGT ATTTTATGGTTGATTGTATATCAATACTAAAAGTTTGAATCAAAAAAC
CDS sequence (LotjaGi1g1v0728800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCGTCAGGTTTCTCATGAAGTTGAACAACGAAACTGTTTCCATCGAGCTTAAGAACGGGACTATTGTCCATGG CACCATTACAGGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACCCTGAAAGGGAAAAATCCAGTTA CTTTGGATCATCTCAGTGTAAGGGGCAACAACATTCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTG GTTGAAGAGACCCCTAGGGTCAAACCTAAGAAGCCAACTGCTGGGGGGAAGCCTTTGGGACGAGGACGGGGGCGTGGACG TGGACGCGGCCGAGGTCGTGGTGGCCGTTAA
Protein sequence (LotjaGi1g1v0728800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL VEETPRVKPKKPTAGGKPLGRGRGRGRGRGRGRGGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 1.2E-72 | – | |
| Gene3D | 1 | 85 | 85 | 5.8E-35 | – | |
| PANTHER | 1 | 114 | 114 | 1.2E-72 | ||
| CDD | 2 | 93 | 92 | 7.89893E-58 | ||
| SUPERFAMILY | 4 | 115 | 112 | 6.29E-25 | ||
| Pfam | 5 | 69 | 65 | 1.7E-18 | ||
| SMART | 5 | 70 | 66 | 3.1E-17 | ||
| MobiDBLite | 82 | 116 | 35 | - | – | |
| MobiDBLite | 102 | 116 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0728800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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