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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription corepressor activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A third class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators. | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|K7KPZ4|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0134000_LC | 15 | ||
| – | PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147600_LC | 15 | ||
| – | PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147600_LC | 15 | ||
| – | PHD finger family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|A0A176VP64|A0A176VP64_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147700_LC | 15 | ||
| – | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; TAIR: AT3G14980.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|A0A072VAI1|A0A072VAI1_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0158900 | 21 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 22 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 22 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 22 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 22 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 22 | ||
| – | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198600_LC | 6 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G05380.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC | 23 | ||
| – | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|V7B190|V7B190_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0198800_LC | 17 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 7.69 |