Domain Predictions — View

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PTHR47592

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0107200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-pol polyprotein; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A1J3EPB7\|A0A1J3EPB7_NOCCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0107200_LC	Domains IPR001878 IPR036875 PF00098 PF14223 PS50158 PTHR47592 PTHR47592:SF7 SM00343 SSF57756 mobidb-lite	10
LotjaGi1g1v0288700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|B2BXI0\|B2BXI0_ARALL Gag-pol polymerase; Found in the gene: LotjaGi1g1v0288700_LC	Domains PTHR47592 PTHR47592:SF3	3
LotjaGi1g1v0793500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase II transcriptional coactivator KELP; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|O65155\|KELP_ARATH RNA polymerase II transcriptional coactivator KELP; TrEMBL-Plants: tr\|A0A151TXZ1\|A0A151TXZ1_CAJCA RNA polymerase II transcriptional coactivator KELP; Found in the gene: LotjaGi1g1v0793500	Domains G3DSA:2.30.31.10 IPR001878 IPR003173 IPR009044 IPR014876 PF02229 PF08766 PF14223 PS50158 PTHR47592 PTHR47592:SF6 SSF54447 mobidb-lite	13
LotjaGi2g1v0096700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-pol polyprotein; TAIR: AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A0B2PNS0\|A0A0B2PNS0_GLYSO Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0096700_LC	Domains G3DSA:4.10.60.10 IPR001878 IPR036875 PF00098 PS50158 PTHR47592 PTHR47592:SF7 SM00343 SSF57756 mobidb-lite	10
LotjaGi2g1v0096700_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|B2BXI0\|B2BXI0_ARALL Gag-pol polymerase; Found in the gene: LotjaGi2g1v0096700_LC	Domains PTHR47592 PTHR47592:SF3	3
LotjaGi3g1v0342100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty1-copia subclass; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|Q1RU49\|Q1RU49_MEDTR Putative polyprotein, related; Found in the gene: LotjaGi3g1v0342100_LC	Domains PF14223 PTHR47592 PTHR47592:SF7	4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
PTHR47592:SF7	PANTHER	1	16.67