Domain Predictions — View

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TIGR01039

Source: TIGRFAM

Description

atpD: ATP synthase F1, beta subunit

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0015986 View details of GO:0015986 AmiGO InterPro QuickGO	Biological process	ATP synthesis coupled proton transport	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.	Subterm of GO:0006754 GO:0015985
GO:0045261 View details of GO:0045261 AmiGO InterPro QuickGO	Cellular component	Proton-transporting ATP synthase complex, catalytic core F(1)	The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.	Subterm of GO:0033178 GO:0044424 Part of GO:0045259
GO:0046933 View details of GO:0046933 AmiGO InterPro QuickGO	Molecular function	Proton-transporting ATP synthase activity, rotational mechanism	Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.	Subterm of GO:0015078 GO:0019829 GO:0044769

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v2169420.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max] gi\|356575611\|ref\|XP_003555932.1\|	Domains G3DSA:1.10.1140.10 G3DSA:3.40.50.300 IPR000194 IPR003593 IPR005722 IPR020003 IPR024034 IPR027417 PF00006 PS00152 PTHR15184 PTHR15184:SF45 SM00382 SSF47917 SSF52540 TIGR01039 cd01133	17
Ljchlorog3v0000060.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP synthase CF1 beta subunit [Lotus japonicus] gi\|13518421\|ref\|NP_084781.1\|	Domains Coil G3DSA:1.10.1140.10 G3DSA:2.40.10.170 G3DSA:3.40.50.300 IPR000194 IPR003593 IPR004100 IPR005722 IPR020003 IPR024034 IPR027417 MF_01347 PF00006 PF02874 PS00152 PTHR15184 PTHR15184:SF43 SM00382 SSF47917 SSF50615 SSF52540 TIGR01039 cd01133	23
LotjaGi5g1v0332700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP synthase subunit beta; TAIR: AT5G08680.1 ATP synthase alpha/beta family protein; Swiss-Prot: sp\|P17614\|ATPBM_NICPL ATP synthase subunit beta, mitochondrial; TrEMBL-Plants: tr\|A0A0L9TFH9\|A0A0L9TFH9_PHAAN ATP synthase subunit beta; Found in the gene: LotjaGi5g1v0332700	Domains G3DSA:1.10.1140.10 G3DSA:2.40.10.170 G3DSA:3.40.50.300 IPR000194 IPR003593 IPR004100 IPR005722 IPR020003 IPR020971 IPR024034 IPR027417 IPR036121 MF_01347 NON_CYTOPLASMIC_DOMAIN PF00006 PF02874 PF11421 PIRSF039072 PS00152 PTHR15184 PTHR15184:SF56 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00382 SSF47917 SSF50615 SSF52540 SignalP-TM TIGR01039 cd01133 cd18110 cd18115 mobidb-lite	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	33.33