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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0332700 |
| Transcript ID | LotjaGi5g1v0332700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: AT5G08680.1 ATP synthase alpha/beta family protein; Swiss-Prot: sp|P17614|ATPBM_NICPL ATP synthase subunit beta, mitochondrial; TrEMBL-Plants: tr|A0A0L9TFH9|A0A0L9TFH9_PHAAN ATP synthase subunit beta; Found in the gene: LotjaGi5g1v0332700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64988530..64992794) extracted from Lotus japonicus Gifu genome v1.2.
AGTAATGCCACGTCATATCCCATTTAACCATTTCAAGTCAAAAGCCTCAAACGACATATTCGCATGCGGAAAACGAATCA CATCCCAAGAGACTCGAACGACGTCGTCCACGTGCCTCCCCCCAAAAACAGTAAAACCATAAAAACACAAAAATGGAACG AAACGGCACCGTTTCGATGAGCTTCACTGCATATAGCTAGCTTCCACTACCTCACTCGAACCCTAACCAGCCATCTTCAC TCTCTCTCTTCTTTCTCTCTCTAACGATGGCTTCACGCAGACTCGCATCGTCTCTGATTCGATCTTCCCTCCGTCGATCT CAATCCAAACCCTCCATTTCCGCTTCCGCATCGCGGATTTCCCAATCCCGACCTGCTTCCGCCGCCCCTTACGGCTACCT CCTCAACCGCGTCGCCGAGTACGCCACCTCCGCCGCGGCTCCCGCTGCTGCTCCTTCCTCGCCTCCGGCGAAGAAGGAGG TCCCCGGTGGTGGGAAGATCACTGATGAGGTTACTGGAAAAGGCGCGATCGGGCAGGTTTGCCAGGTCATCGGTGCCGTC GTCGATGTCAGATTTGAGGAGGGTTTGCCTCCGATCTTGACCGCGCTTGAGGTTCTGGATCACACTTCGAGGTTGGTGTT GGAAGTCGCGCAGCATTTGGGTGAGGGTGTTGTTCGGACTATTGCTATGGATGGTACTGAAGGGGTTGTTCGAGGGTGGC GCGTGCTCAACACTGGGTCTCCTATTACTGTAAGTGCTCAATCTCTTGCTCCATTTTCGTTTTCTTTTCACTGAAAATCC TTGATTTGATTTTGGATCATTTCTGTATCTAGGTTTTTGTTTTAGCGATTTGGGAATTGACTAGATTTGAAAAAATTGGA GTTGATTTGATGTTTTGTATGAACTAGTTTGCTACTGTGTGTTGATTGGAAGATCCAATTGTTTCAATTTTCTTTTGAAT CGATCGATGATTCTTTTTATCGATTTTGCTGTCATGTCACTGTATACTTCGTGATTCTCTCAATATTTTGAAATCTGTTT CATTGTTTCATGTGGGTAGTCTAGATTTCCTGTGTGATTTGAATTCGAATTTAAACTCATTTTAGGGTTGTGTTGTTTCC TGAGGCACCATTTTTGTTTGTTAATGAATAAGTATATGGTCATTGTTCTTGTTATCTGATTCAACTGCTACAGTGTCCTC TAGTGCTGGACTTGCATTTTGCAGGCTTGGATTTGGCAACTTAATTTTTGATTTTTTTGTCTGTTAATAGTGTTTATTTT CTAATTTTCTAATATGCTTTGTGTGTGTTCTGTTTAGGTTCCTGTTGGAAGGGTTACCCTTGGTAGAATCATGAATGTTA TTGGAGAGCCTATTGACGAGAAGGGTGACTTCAGTAAGTAACCTATGAATATTTTTTTTAAACTGATTAATAGATAGAAA TCTTCTATGATATCTGTGGAATGCTTTTAACTGATGGTAATTTGTGTGAATTGTCTTAGAAACCGAGCATTATCTGCCCA TTCATAGAGAAGCTCCTTCTTTTGTTGAGCAAGCAACTGAACAGCAAATTCTTGTTACTGGGATCAAGGTATTCTTTTTA TGTTTCTTATTTTTTTATTGTTTGAAATTAGTTTGTGGAGCTTATGAGTTATGACTCAGTACTGATTTTGCATAATTTTT TCCTTACAGGTTGTTGACATGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTCGGAAA AACTGTGCTTATTATGGAACTTATTAACAATGTCGCCAAGGCCCATGGTTTGTTCTTAATGCACTTCATATCTTCAGTTG ATATTCTTTTACCTTTCTGTACTGTATGCTTATGGTTTTCATTTGTTAGGTGGTTTCTCTGTATTTGCTGGAGTTGGGGA ACGAACCCGAGAGGGTAATGATTTGTACAGAGAAATGATCGAGAGTGGTGTTATTAAGCTAGGTGATAAGCAGGTGAGCA CATTTCCGTTCTCTATACATGTTCAACAGTATTCATAATTCTAGTTTCTGTTAACAAATTTTATTAACTATGGGCGTTTC ATGGGATCAGAGTGAAAGCAAATGCGCTCTTGTGTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGTC TCACTGGTCTTACTGTGGCTGAACACTTCCGTGATGCAGAAGGACAGGATGTGCTTCTTTTTGTTGACAACATTTTCCGT TTTACCCAAGTATGGACATCTTATCTAGAATAACTGTTCTTTTGTTGATGATATTGTTTGCCACTGTTCAATTTACATTG TTATGTATTGTGCAGGCTAACTCTGAGGTGTCTGCTTTGCTTGGACGTATCCCATCTGCTGTCGGTTACCAACCGACACT GTCTACTGATCTTGGAGGTCTCCAAGAGCGTATTACAACAACCAAGAAGGGTTCAATTACTTCTGTCCAAGCTATCTATG TGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTCGCTCACTTGGATGCTACAACTGTGTTGTCACGACAG GTTTGGTTTGTTATTTATAATGACCATTTTGCTGATATATTTTATAATTATAGTTTGCTAAATAGTATGATTTGATGATC TTGAGCAGATCTCTGAGCTTGGTATCTATCCTGCTGTCGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTTATT TTGGGTGAGGACCACTATGAAACTGCTCGTGGTGTCCAGAAGGTTCTTCAAAACTACAAGAATCTTCAGGATATCATTGC TATTTTGGGAATGGATGAGCTCAGTGAAGACGATAAATTGACTGTTGCCCGTGCCCGAAAGATTCAAAGATTCTTGAGCC AGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGACTTGAAGGAGAACATCACCAGTTTCCAG GTAATTTTTTTGTCATTTAATATTTTTTAAAATGACATTAAATAGTATGCAGAGGCTTTGGTTTCTCATCTTGCTATGTG CTGTATGTTATTTTGTTTGGCAAATTCCCCCCCTCCCCCCCTTCATGAATGCCATCCTATATCTTCATGTAAATTGAATT TTGGTTTCCATTAAGCTGCACCTGCAATGTCACTTTGATTTCTGTTTGTTACCCTTATTTTTTTTATTGATTTTGTCAAA TAGAAGCTCTTATTGTGGGAGTTCATGCAATTGGTTGTCTTATCTGGACTTAAGTGCTATTCCTATTTTATGTTTTCCTT GTTTACTTTAGGACTTCGTTTTAAATATCTTTGGCTCATTTCTAGCGATTTATTTGTACTTGCTCAATCTCATTGGTTCA ATCATATTCCATAACCTGTTTTACCATGGTTTTCTATGTGGACTAATGCATGGTTAATGGTGATACCTTTGTTTTATTGT AACTGACAGGGCGTGTTGGATGGCAAGTACGATGATCTCCCCGAGCAGTCATTTTACATGGTTGGTGGTATTGAGGAGGT GATTGCTAAGGCAGAAAAGATTTCCAAGGAATCAGCAACATCTTGATCAAATTACACCTCCATTTTAATCATCACTTGTT TATTTTACAATGGCGAAATTTAATAATCTAGGAACTCTACTCTTTCTTGGCAACGCCAAAACCACAATTTTCCATTTTTA AAGTTTGGAAACGTGTAAGGTTATTCCTTTCATTTTAATGTTGCGGACTTTGAGGTGACCAAATGCTCCCTTTTTTTATC TGGTGTGTTGTTTTAATAAGGGGAGAGGCAGAGGTTGTACATTTTTACTTCCTGATTCAAAAACGTTGGATGCATCAACT GTTCTATGTGCAGCTTAAGTTGATTCCTTTTTTTAGTTTTTGCTTTTGTGAGTAAAAAAATTATGCAGTCCAAATGGTGA TATTTTATTTCAATTATGCAATATTAGGAAGAGATTAGTTTTATTTGTAAAATTAATTATACATTCACTGTTTTTTAAAA AAAGTGTGCATGTTTCAAATTTCCACGTAACTTACTAATCCTATAGATTTAAGTTCTAATTTTATTTAAAGTTTAGATGA GTGTCTAATCCAAAATTGAAATAAAATTTCAATTACTAATGAAATGTTGGTTTAATTGTAAGTAAGCTAGATCCCTCTAA GTGTGATTAACAAGTTTGAACCCTCTGAGTATCATTTGTTTGGCTGTTGTTTGGAGTGACAACTTGAGTTTTCTGAATAA ATGATGACATCTATCTATTTAACAC
CDS sequence (LotjaGi5g1v0332700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACGCAGACTCGCATCGTCTCTGATTCGATCTTCCCTCCGTCGATCTCAATCCAAACCCTCCATTTCCGCTTC CGCATCGCGGATTTCCCAATCCCGACCTGCTTCCGCCGCCCCTTACGGCTACCTCCTCAACCGCGTCGCCGAGTACGCCA CCTCCGCCGCGGCTCCCGCTGCTGCTCCTTCCTCGCCTCCGGCGAAGAAGGAGGTCCCCGGTGGTGGGAAGATCACTGAT GAGGTTACTGGAAAAGGCGCGATCGGGCAGGTTTGCCAGGTCATCGGTGCCGTCGTCGATGTCAGATTTGAGGAGGGTTT GCCTCCGATCTTGACCGCGCTTGAGGTTCTGGATCACACTTCGAGGTTGGTGTTGGAAGTCGCGCAGCATTTGGGTGAGG GTGTTGTTCGGACTATTGCTATGGATGGTACTGAAGGGGTTGTTCGAGGGTGGCGCGTGCTCAACACTGGGTCTCCTATT ACTGTTCCTGTTGGAAGGGTTACCCTTGGTAGAATCATGAATGTTATTGGAGAGCCTATTGACGAGAAGGGTGACTTCAA AACCGAGCATTATCTGCCCATTCATAGAGAAGCTCCTTCTTTTGTTGAGCAAGCAACTGAACAGCAAATTCTTGTTACTG GGATCAAGGTTGTTGACATGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTCGGAAAA ACTGTGCTTATTATGGAACTTATTAACAATGTCGCCAAGGCCCATGGTGGTTTCTCTGTATTTGCTGGAGTTGGGGAACG AACCCGAGAGGGTAATGATTTGTACAGAGAAATGATCGAGAGTGGTGTTATTAAGCTAGGTGATAAGCAGAGTGAAAGCA AATGCGCTCTTGTGTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGTCTCACTGGTCTTACTGTGGCT GAACACTTCCGTGATGCAGAAGGACAGGATGTGCTTCTTTTTGTTGACAACATTTTCCGTTTTACCCAAGCTAACTCTGA GGTGTCTGCTTTGCTTGGACGTATCCCATCTGCTGTCGGTTACCAACCGACACTGTCTACTGATCTTGGAGGTCTCCAAG AGCGTATTACAACAACCAAGAAGGGTTCAATTACTTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCT GCTCCTGCTACCACCTTCGCTCACTTGGATGCTACAACTGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCTGC TGTCGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGACCACTATGAAACTGCTCGTGGTG TCCAGAAGGTTCTTCAAAACTACAAGAATCTTCAGGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGACGAT AAATTGACTGTTGCCCGTGCCCGAAAGATTCAAAGATTCTTGAGCCAGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGC CCCAGGCAAATATGTTGACTTGAAGGAGAACATCACCAGTTTCCAGGGCGTGTTGGATGGCAAGTACGATGATCTCCCCG AGCAGTCATTTTACATGGTTGGTGGTATTGAGGAGGTGATTGCTAAGGCAGAAAAGATTTCCAAGGAATCAGCAACATCT TGA
Protein sequence (LotjaGi5g1v0332700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRRLASSLIRSSLRRSQSKPSISASASRISQSRPASAAPYGYLLNRVAEYATSAAAPAAAPSSPPAKKEVPGGGKITD EVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHTSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPI TVPVGRVTLGRIMNVIGEPIDEKGDFKTEHYLPIHREAPSFVEQATEQQILVTGIKVVDMLAPYQRGGKIGLFGGAGVGK TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVA EHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDP APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDD KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKISKESATS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 37 | 37 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| Pfam | 1 | 48 | 48 | 8.7E-14 | ||
| PANTHER | 1 | 559 | 559 | 0.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 559 | 559 | 0.0 | – | |
| Phobius | 6 | 15 | 10 | - | – | |
| PIRSF | 6 | 559 | 554 | 3.0E-298 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 560 | 540 | - | – | |
| MobiDBLite | 58 | 77 | 20 | - | – | |
| Gene3D | 77 | 159 | 83 | 3.9E-33 | – | |
| SUPERFAMILY | 85 | 159 | 75 | 6.54E-25 | ||
| Hamap | 86 | 553 | 468 | 56.217 | ||
| CDD | 87 | 160 | 74 | 2.02057E-32 | – | |
| TIGRFAM | 88 | 553 | 466 | 1.3E-246 | ||
| Pfam | 91 | 157 | 67 | 4.9E-18 | ||
| CDD | 159 | 440 | 282 | 0.0 | – | |
| Gene3D | 160 | 437 | 278 | 3.8E-118 | – | |
| SUPERFAMILY | 161 | 441 | 281 | 9.62E-90 | ||
| Pfam | 214 | 435 | 222 | 1.3E-60 | ||
| SMART | 226 | 498 | 273 | 1.8E-6 | ||
| ProSitePatterns | 426 | 435 | 10 | - | ||
| SUPERFAMILY | 438 | 554 | 117 | 3.14E-51 | – | |
| Gene3D | 438 | 558 | 121 | 6.2E-58 | ||
| CDD | 442 | 549 | 108 | 1.07083E-72 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | ATP biosynthetic process | The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | ATP synthesis coupled proton transport | The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Cellular component | Proton-transporting ATP synthase complex, catalytic core F(1) | The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. | ||
| Biological process | ATP metabolic process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Proton-transporting ATP synthase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi5g1v0332700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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