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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3386550 |
| Transcript ID | Lj3g3v3386550.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 413 | 413 | 1.20E-251 | – | |
| Phobius | 1 | 281 | 281 | – | – | |
| PANTHER | 1 | 413 | 413 | 1.20E-251 | – | |
| Gene3D | 29 | 367 | 339 | 4.10E-117 | ||
| TIGRFAM | 36 | 367 | 332 | 1.80E-158 | ||
| SUPERFAMILY | 37 | 367 | 331 | 2.59E-85 | ||
| CDD | 38 | 320 | 283 | 1.45E-91 | ||
| Pfam | 45 | 315 | 271 | 1.60E-45 | ||
| ProSitePatterns | 168 | 183 | 16 | – | ||
| ProSitePatterns | 201 | 229 | 29 | – | ||
| Phobius | 282 | 304 | 23 | – | – | |
| TMHMM | 282 | 304 | 23 | – | – | |
| Phobius | 305 | 384 | 80 | – | – | |
| Phobius | 385 | 405 | 21 | – | – | |
| TMHMM | 386 | 405 | 20 | – | – | |
| Phobius | 406 | 413 | 8 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of Lj3g3v3386550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3386550.1, powered by CORGI.
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