Domain Predictions — View

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cd16982

Source: CDD

Description

CID_Pcf11

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0679800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A072U4Q6\|A0A072U4Q6_MEDTR ENTH/VHS-like protein; Found in the gene: LotjaGi1g1v0679800	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 PTHR15921:SF9 SM00582 SSF48464 cd16982 mobidb-lite	14
LotjaGi2g1v0457600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi2g1v0457600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi2g1v0457600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi2g1v0457600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi2g1v0457600.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi2g1v0457600.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|A0A1J7HJ63\|A0A1J7HJ63_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457600	Domains G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 SM00582 SSF48464 cd16982 mobidb-lite	13
LotjaGi5g1v0091600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|K7LHS7\|K7LHS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0091600	Domains Coil G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 PTHR15921:SF9 SM00582 SSF48464 cd16982 mobidb-lite	15
LotjaGi5g1v0091600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA cleavage complex 2 protein Pcf11; TAIR: AT2G36480.1 pre-mRNA cleavage complex 2 Pcf11-like protein; Swiss-Prot: sp\|Q0WPF2\|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr\|K7LHS7\|K7LHS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0091600	Domains Coil G3DSA:1.25.40.90 IPR006569 IPR006903 IPR008942 IPR013087 PF04818 PS00028 PS51391 PTHR15921 PTHR15921:SF9 SM00582 SSF48464 cd16982 mobidb-lite	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11