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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0420900 |
| Transcript ID | LotjaGi3g1v0420900.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8; TrEMBL-Plants: tr|A0A0R0FUV4|A0A0R0FUV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0420900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82940858..82943077) extracted from Lotus japonicus Gifu genome v1.2.
TATGAATGTTTGTTGTTTGTGTTGTCTACTATCTATGGATGGTTTTGGGGCATTTCTGATTTATTATCCGTGGCTTTAGA ATCTGAGTGCATATGGGCTTGCTCTTTTTCTTTAACAGAAGTTTTGTTTTTTTGTAGTGATGGCAGGTGTTGCTCCCGAA GGATCTCAATTTGATGCTCGCCAGTATGACGCTAAGATGAGTGATTTGTACGTCCCTTTACGTTATATTCTTCATTTGTT GTGATGATTGAATTTGTTATTTGTGCACCTTTTGCTGTAATTGTATGTATAACAAATTAATTACGCAGGCTTTCTTCTGA TGGGCAAGATTTCTTCACCTCATATGATGAAGTCTATGATAGCTTTGACGCAATGGGATTGCAAGAAAATCTTCTGAGAG GCATTTATGCTTATGGTATGTACTGGCAGATATCCTCATATCCCTTTTATTTAAGTGCTTATTCTTATGTTACCTGTTAC TGTGTAGATTGTTTGGTCAGCAAGGCTTAACCTTGGAGTCAGGATTAGATCTTATGTGTTTTGTATTTCTGCATTCCCCT CGTTGGAAACATTGAATGTCTTATTTGTGTGTGTGGCATGCTTGATAATGTTACATCTAAGGATGGGTATAAAAAAATTC ATTTTGTATATGGTTGCCTGCTTTTTTTTGTATTTATTCTTTAAATTTGCCTGTGTTTAATCTATTTACTAGTAGATAAC AATCTAATTTGAAAAATGGGATTGAAATACATAAATTTTCTGAATATCGAACTGTTTTGAAAATGTATACATGTTTCATG AGGGATTTAGTAGTGTTTAGTATTGTATGTTTAAAAGAATAATTGTTACTCTTGCTTCAATTTTTCTTAAGTTATTGTGT GTGATGTTTTATTCTTGTTATGAAGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGG TCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATT ATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAACAGATTGAGAAGGTCATGCGAGCA CTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGC TGGTGTCCACACAGTTGTTGGCACTCCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCTGATAGCATAA AGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGGTTTGCCAATTTACTTGTATTCCA CTTGTTAAAACTGAGTCTGCGATTTTAGCCTCGGCTGTGCTATACTTTTTTACCTTCTGAATTCCAGTGTTTGTAAATAT CTTGGCAGTTTGAAGCATGAATATCCGTTTGTTGATAAAATGCTTATAAATTTCATTGGGTGAAATCTTTATGCAGTGGT GCCTACTATTAGTTAAAAGTATATATTCTTTCAATAATTGTGAATATTTACGTCGGTGTTGCAGATCTATGACATCTTCC AGCTGCTGCCAGGCAAAATTCAGGTTGGAGTGTTCTCTGCTACGATGCCACCTGAAGCACTTGAGATTACCAGGAAGTTC ATGAACAAGCCAGTGAGAATCCTGGTAAAGCGTGACGAACTGACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGA GAAGGAGGAGTGGAAGCTGGAGACACTATGCGACCTCTATGAGACCTTAGCTATCACCCAGAGTGTCATCTTTGTGAACA CCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGGAGCAATGATCACACCGTCTCAGCCACCCACGGTGACATGGAC CAGAACACCAGGGACATCATCATGCGTGAATTCCGGTCCGGCTCCTCTCGAGTTCTCATCACCACTGACCTCCTGGCCCG TGGTATTGACGTGCAGCAAGTGTCTCTAGTCATAAACTATGACCTCCCAACTCAGCCTGAAAACTATCTCCATCGTATTG GTAGGAGTGGGCGTTTCGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATTCCAGGATGCTGTCTGATATT CAGAAGTTCTACAATGTGACTGTGGAGGAGCTGCCATCCAATGTTGCTGATCTGCTCTGA
CDS sequence (LotjaGi3g1v0420900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTTGTTTGTGTTGTCTACTATCTATGGATGGTTTTGGGGCTTTCTTCTGATGGGCAAGATTTCTTCACCTCATA TGATGAAGTCTATGATAGCTTTGACGCAATGGGATTGCAAGAAAATCTTCTGAGAGGCATTTATGCTTATGGTTTTGAGA GGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACT GGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGC ACCAACAAGGGAGCTGGCACAACAGATTGAGAAGGTCATGCGAGCACTTGGTGATTACCTTGGTGTTAAGGTTCATGCTT GTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCACACAGTTGTTGGCACTCCAGGGCGT GTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCTGATAGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCT TTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCAGGCAAAATTCAGGTTGGAGTGTTCTCTGCTA CGATGCCACCTGAAGCACTTGAGATTACCAGGAAGTTCATGAACAAGCCAGTGAGAATCCTGGTAAAGCGTGACGAACTG ACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGAGAAGGAGGAGTGGAAGCTGGAGACACTATGCGACCTCTATGA GACCTTAGCTATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGGAGCA ATGATCACACCGTCTCAGCCACCCACGGTGACATGGACCAGAACACCAGGGACATCATCATGCGTGAATTCCGGTCCGGC TCCTCTCGAGTTCTCATCACCACTGACCTCCTGGCCCGTGGTATTGACGTGCAGCAAGTGTCTCTAGTCATAAACTATGA CCTCCCAACTCAGCCTGAAAACTATCTCCATCGTATTGGTAGGAGTGGGCGTTTCGGAAGAAAAGGTGTTGCTATAAACT TTGTGACATTGGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTGGAGGAGCTGCCATCCAAT GTTGCTGATCTGCTCTGA
Protein sequence (LotjaGi3g1v0420900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVVCVVYYLWMVLGLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGT GKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGR VFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSG SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSN VADLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 16 | 14 | - | – | |
| PANTHER | 14 | 399 | 386 | 2.1E-232 | – | |
| PANTHER | 14 | 399 | 386 | 2.1E-232 | – | |
| Phobius | 17 | 20 | 4 | - | – | |
| Phobius | 21 | 405 | 385 | - | – | |
| Gene3D | 22 | 240 | 219 | 3.7E-66 | – | |
| ProSiteProfiles | 32 | 60 | 29 | 10.321 | ||
| CDD | 36 | 234 | 199 | 1.11123E-134 | – | |
| SMART | 51 | 248 | 198 | 1.4E-54 | ||
| Pfam | 57 | 218 | 162 | 9.9E-40 | ||
| ProSiteProfiles | 63 | 233 | 171 | 28.359 | ||
| SUPERFAMILY | 101 | 386 | 286 | 2.63E-73 | ||
| ProSitePatterns | 179 | 187 | 9 | - | ||
| Gene3D | 241 | 405 | 165 | 2.3E-58 | – | |
| ProSiteProfiles | 244 | 405 | 162 | 26.06 | ||
| CDD | 245 | 375 | 131 | 3.54178E-61 | – | |
| Pfam | 258 | 366 | 109 | 5.0E-29 | ||
| SMART | 285 | 366 | 82 | 2.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0420900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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