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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0420900 |
| Transcript ID | LotjaGi3g1v0420900.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT1G54270.2 eif4a-2; Swiss-Prot: sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr|A0A0R0FUV4|A0A0R0FUV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0420900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82940997..82943077) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGGTGTTGCTCCCGAAGGATCTCAATTTGATGCTCGCCAGTATGACGCTAAGATGAGTGATTTGTACGTCCCTTT ACGTTATATTCTTCATTTGTTGTGATGATTGAATTTGTTATTTGTGCACCTTTTGCTGTAATTGTATGTATAACAAATTA ATTACGCAGGCTTTCTTCTGATGGGCAAGATTTCTTCACCTCATATGATGAAGTCTATGATAGCTTTGACGCAATGGGAT TGCAAGAAAATCTTCTGAGAGGCATTTATGCTTATGGTATGTACTGGCAGATATCCTCATATCCCTTTTATTTAAGTGCT TATTCTTATGTTACCTGTTACTGTGTAGATTGTTTGGTCAGCAAGGCTTAACCTTGGAGTCAGGATTAGATCTTATGTGT TTTGTATTTCTGCATTCCCCTCGTTGGAAACATTGAATGTCTTATTTGTGTGTGTGGCATGCTTGATAATGTTACATCTA AGGATGGGTATAAAAAAATTCATTTTGTATATGGTTGCCTGCTTTTTTTTGTATTTATTCTTTAAATTTGCCTGTGTTTA ATCTATTTACTAGTAGATAACAATCTAATTTGAAAAATGGGATTGAAATACATAAATTTTCTGAATATCGAACTGTTTTG AAAATGTATACATGTTTCATGAGGGATTTAGTAGTGTTTAGTATTGTATGTTTAAAAGAATAATTGTTACTCTTGCTTCA ATTTTTCTTAAGTTATTGTGTGTGATGTTTTATTCTTGTTATGAAGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGG AATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACATTCTGTTCTG GAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAACAG ATTGAGAAGGTCATGCGAGCACTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGA GGATCAGCGCATTCTCCAAGCTGGTGTCCACACAGTTGTTGGCACTCCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGT CTCTTCGCCCTGATAGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGGTT TGCCAATTTACTTGTATTCCACTTGTTAAAACTGAGTCTGCGATTTTAGCCTCGGCTGTGCTATACTTTTTTACCTTCTG AATTCCAGTGTTTGTAAATATCTTGGCAGTTTGAAGCATGAATATCCGTTTGTTGATAAAATGCTTATAAATTTCATTGG GTGAAATCTTTATGCAGTGGTGCCTACTATTAGTTAAAAGTATATATTCTTTCAATAATTGTGAATATTTACGTCGGTGT TGCAGATCTATGACATCTTCCAGCTGCTGCCAGGCAAAATTCAGGTTGGAGTGTTCTCTGCTACGATGCCACCTGAAGCA CTTGAGATTACCAGGAAGTTCATGAACAAGCCAGTGAGAATCCTGGTAAAGCGTGACGAACTGACCCTGGAGGGTATCAA GCAGTTCTATGTCAATGTTGAGAAGGAGGAGTGGAAGCTGGAGACACTATGCGACCTCTATGAGACCTTAGCTATCACCC AGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGGAGCAATGATCACACCGTCTCA GCCACCCACGGTGACATGGACCAGAACACCAGGGACATCATCATGCGTGAATTCCGGTCCGGCTCCTCTCGAGTTCTCAT CACCACTGACCTCCTGGCCCGTGGTATTGACGTGCAGCAAGTGTCTCTAGTCATAAACTATGACCTCCCAACTCAGCCTG AAAACTATCTCCATCGTATTGGTAGGAGTGGGCGTTTCGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGAT TCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTGGAGGAGCTGCCATCCAATGTTGCTGATCTGCTCTG A
CDS sequence (LotjaGi3g1v0420900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGTGTTGCTCCCGAAGGATCTCAATTTGATGCTCGCCAGTATGACGCTAAGATGAGTGATTTGCTTTCTTCTGA TGGGCAAGATTTCTTCACCTCATATGATGAAGTCTATGATAGCTTTGACGCAATGGGATTGCAAGAAAATCTTCTGAGAG GTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAGGCTCAG TCTGGAACTGGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTT GGTTTTGGCACCAACAAGGGAGCTGGCACAACAGATTGAGAAGGTCATGCGAGCACTTGGTGATTACCTTGGTGTTAAGG TTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCACACAGTTGTTGGCACT CCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCTGATAGCATAAAGATGTTTGTTTTGGATGAGGCTGA TGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCAGGCAAAATTCAGGTTGGAGTGT TCTCTGCTACGATGCCACCTGAAGCACTTGAGATTACCAGGAAGTTCATGAACAAGCCAGTGAGAATCCTGGTAAAGCGT GACGAACTGACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGAGAAGGAGGAGTGGAAGCTGGAGACACTATGCGA CCTCTATGAGACCTTAGCTATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACTGGCTCACTGACAAGA TGCGGAGCAATGATCACACCGTCTCAGCCACCCACGGTGACATGGACCAGAACACCAGGGACATCATCATGCGTGAATTC CGGTCCGGCTCCTCTCGAGTTCTCATCACCACTGACCTCCTGGCCCGTGGTATTGACGTGCAGCAAGTGTCTCTAGTCAT AAACTATGACCTCCCAACTCAGCCTGAAAACTATCTCCATCGTATTGGTAGGAGTGGGCGTTTCGGAAGAAAAGGTGTTG CTATAAACTTTGTGACATTGGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTGGAGGAGCTG CCATCCAATGTTGCTGATCTGCTCTGA
Protein sequence (LotjaGi3g1v0420900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGVAPEGSQFDARQYDAKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGFERPSAIQQRGIVPFCKGLDVIQQAQ SGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGT PGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREF RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEEL PSNVADLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 402 | 384 | 1.8E-224 | – | |
| PANTHER | 19 | 402 | 384 | 1.8E-224 | – | |
| Gene3D | 30 | 243 | 214 | 2.8E-62 | – | |
| CDD | 44 | 237 | 194 | 4.47044E-127 | – | |
| SMART | 54 | 251 | 198 | 1.4E-54 | ||
| Pfam | 60 | 221 | 162 | 1.0E-39 | ||
| ProSiteProfiles | 66 | 236 | 171 | 28.359 | ||
| SUPERFAMILY | 104 | 389 | 286 | 2.72E-73 | ||
| ProSitePatterns | 182 | 190 | 9 | - | ||
| Gene3D | 244 | 408 | 165 | 2.3E-58 | – | |
| ProSiteProfiles | 247 | 408 | 162 | 26.06 | ||
| CDD | 248 | 378 | 131 | 2.24036E-61 | – | |
| Pfam | 261 | 369 | 109 | 5.1E-29 | ||
| SMART | 288 | 369 | 82 | 2.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0420900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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