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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242500 |
| Transcript ID | LotjaGi6g1v0242500.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3; TrEMBL-Plants: tr|A0A072V6Z3|A0A072V6Z3_MEDTR DEAD-box ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0242500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55470393..55473833) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGA GGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCG AGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGC ACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGAGTGAGTATACCCGTTCTG CTTTCTCAAATTTCTCTGTATCTGTGTTTTTACTTCGTTTGCCTAAGCATTCCCTGAGAAAACAAAGTAATTTGCGGTTG AATTTCTCAATTAGGGTTTTTGGGTAAGACTCAATTTTAGGGGTTTTGATTGGTGTTTGTGTTTGGATGGATAATGTTGA TTTCAGAAATTTATGACTAGCAAGAAATTTTCACATGGGGTAGCTGATTTTCAGATGGAGGGTTTTTGGAGGGTGATTTT TTGTTTTCAATTTGTATAAATTATAGGAAATTTTTAAAGAATGATAGACACTTAGTCACCTAAATGGCTCTGTTGAGCAT AATATTGGAGATGTGTGATTTGCTTTGAACTGAGGATATTGTTTTCTTTTCGGTATGTGTTATTGTCAAGATATATGGTA TAATGATTTTCTGAACAGGGTGCAGGTGTTAATCTTGTCGCCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATAT TGGCTGTTGGGGATTTTATTAACATACAAGCGCATGCTTGCGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTT GAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGCAGAGTTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGAC TATCAAGATGCTAGTTCTTGTGAGTTCATGGCTACTATAATTGTCAATTCTTCATTGCATTTATTATTTGTTTTGTTGTC ACCATATGTCAATGAGTATCTTATATGTATTTTTTCTTTCTATTAACAGGATGAATCTGATGAGATGTTGAGCAGAGGGT TTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTGGGTTCTCTTTCTCTGAATGTCCTTATT GTTGTTATTGTATTCTGAATGAATTTTCTCCTATTTGAAATCTTATTATATTTTAACATAAACTAAGGTGCATATTGGTA GTATATTTTCTTTTGGCAATACTTAGGTGGGGCAAGGACATGAAATAAAAATGATCTTGAATTTGAAATATACCGGAACT CCAATTCAGAAGAATTTCACTAATAAATTAGTATTGGGGGGGGAGTCTCTTAGGAGGGTGTTTGAAAATTGGATTTAGTG GCTTGGCATGACTTGAAGGTTTGACAATATGGGGAAAGAAACTGTAGCAATGAATCAAGCCATATATTGAAGGAAGGATG GGGGAGGATGAGAAGTTTGATTCGTGAACTATTTTCCTGCATATGACTATTTTTAGTAGTTTAATTTTTGAATTCATTGA AAACTAAGCATCTAAAATCAGCGACATTAAGAGCTGCTGATTTTCTCCATAATAAGCAGCTTGCACTATCATTTGACTGT TGTCCTGTTCTCAAATGAAGTGGCTAGGCGAGGATGTTCTTTTACGGATTTTTTGTAGGTCCTGATATCTTTAATTGGAT TTGTATTTTGATTTAAACTTATGCTGGTCCAATAACTCACTTTTGCTTTATAACTTAACTGATTACGACTTCAAGATCCT TAGACCTTATTACTGATGTAGTATCAAGTATGTCGTGTTCTCTGAACTGTTGGGTTTTTACTATGTAGGTTTGCTTGATT TCTGCTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGA TGAATTGACATTGGAGGTAAGCAGTTGCTTTCATTCTCTTAGTGCCTTTTGATTTTTAACTGGATATTGATGCAATTGCC TCCTCCCCCTCCCAATGACAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATG TGATCTTTATGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGGTAAATGAAAATTATCATC ATTTCATTTGATTGGCTGGCTGTTCATTTCATCTCACTTTTAACAGACTAACAGAGTAGATTATTAGATTTTGCACTATC TTTCTATTCTTGCTCATTGTGATTTGTTTATCATTTCTGTGGTATTAATATATCCACTTTGAATAGGTGGACTGGTTAAC TGAAAAGATGCGTAATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGG CAGAATTTCGTGCTGGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGCAAGA TATTACACCATTCTGTGTGTTTTTATTTTTCCTGTGATGAGATATCATGAGTTCACCTTGGAAATATCCTGCTTAATGTG TGATACAGATGCTGCATAATTATGAGAGGCCTCCCTAAGAATTGTTTCTGCTGCTTGTTGGAAACATAGATAATAATTGC TAACTTGAAGAGAACCTAAAGAATATTATTGTTGCAGACTTACAGCAAAAAAAATCATGACTGTTTGGACTAATAACTAA TTTAGGTTATCAAGGGGCCTGGTATTCCAAATTTCAGGGATTTAACAAAATTCTCTGGTTCTTCCTTTGCTGGTTGTATT TTTTGTTTTGGGTACAATGAAGGATGGGCTAATATAATAGCAATTTATGTTTCGCTCTGCATAAATACAAACCGATGGAA TTATTTGACTGTCAATTAATTTATTGAGAAATTCTTCCCCTGATTTCTTTTGAATTGTACATGGAGGAATCAATCTCCTT TTTCACTGATCATGTATTTGCTTCTGTTATCAGGTTTCTTTAGTTATTAATTATGACCTTCCCAATAACCGTGAGCTGTA CATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAGGTATTGGAAATGTTAAAATTAGTTGTATTTCTATTATTTA CTGTCCTGAGTAGTTACCTAGTCTTATTTTCATATCAGAAATTGTTCTGCACTATAGGAGGATTTTGAGAGGTTATCCGT TGATTCCTTATCTTCCACTCTTCCCATGTTCTCAAATTGTTTTGCAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGAT ATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTCAGATTGATGAAATGCCCATGAATGTTGCTGATCTTATATA G
CDS sequence (LotjaGi6g1v0242500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTTTACGGATTTTTTGTTTGCTTGATTTCTGCTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCAT GACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGA GGGAAGAGTGGAAATTTGATACTCTATGTGATCTTTATGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACT AAGAGAAAGGTGGACTGGTTAACTGAAAAGATGCGTAATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCA GAGAGAAAGAGATGCAATTATGGCAGAATTTCGTGCTGGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTG GTCTTGATGTGCAGCAGGTTTCTTTAGTTATTAATTATGACCTTCCCAATAACCGTGAGCTGTACATTCATCGGATTGGT CGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGA ACAATATTACAGTACTCAGATTGATGAAATGCCCATGAATGTTGCTGATCTTATATAG
Protein sequence (LotjaGi6g1v0242500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFYGFFVCLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT KRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMAEFRAGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| PANTHER | 6 | 184 | 179 | 7.9E-95 | – | |
| PANTHER | 6 | 184 | 179 | 7.9E-95 | – | |
| CDD | 8 | 34 | 27 | 1.78995E-9 | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 205 | 189 | - | – | |
| Gene3D | 37 | 205 | 169 | 3.5E-62 | – | |
| SUPERFAMILY | 39 | 201 | 163 | 5.32E-50 | ||
| ProSiteProfiles | 44 | 205 | 162 | 26.991 | ||
| CDD | 45 | 175 | 131 | 9.22095E-66 | – | |
| Pfam | 58 | 166 | 109 | 3.1E-32 | ||
| SMART | 85 | 166 | 82 | 7.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0242500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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