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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0420900 |
| Transcript ID | LotjaGi3g1v0420900.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT1G54270.1 eif4a-2; Swiss-Prot: sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10; TrEMBL-Plants: tr|A0A151T9F2|A0A151T9F2_CAJCA Eukaryotic initiation factor 4A-10; Found in the gene: LotjaGi3g1v0420900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82940876..82943164) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTGTCTACTATCTATGGATGGTTTTGGGGCATTTCTGATTTATTATCCGTGGCTTTAGAATCTGAGTGCATATGGGC TTGCTCTTTTTCTTTAACAGAAGTTTTGTTTTTTTGTAGTGATGGCAGGTGTTGCTCCCGAAGGATCTCAATTTGATGCT CGCCAGTATGACGCTAAGATGAGTGATTTGTACGTCCCTTTACGTTATATTCTTCATTTGTTGTGATGATTGAATTTGTT ATTTGTGCACCTTTTGCTGTAATTGTATGTATAACAAATTAATTACGCAGGCTTTCTTCTGATGGGCAAGATTTCTTCAC CTCATATGATGAAGTCTATGATAGCTTTGACGCAATGGGATTGCAAGAAAATCTTCTGAGAGGCATTTATGCTTATGGTA TGTACTGGCAGATATCCTCATATCCCTTTTATTTAAGTGCTTATTCTTATGTTACCTGTTACTGTGTAGATTGTTTGGTC AGCAAGGCTTAACCTTGGAGTCAGGATTAGATCTTATGTGTTTTGTATTTCTGCATTCCCCTCGTTGGAAACATTGAATG TCTTATTTGTGTGTGTGGCATGCTTGATAATGTTACATCTAAGGATGGGTATAAAAAAATTCATTTTGTATATGGTTGCC TGCTTTTTTTTGTATTTATTCTTTAAATTTGCCTGTGTTTAATCTATTTACTAGTAGATAACAATCTAATTTGAAAAATG GGATTGAAATACATAAATTTTCTGAATATCGAACTGTTTTGAAAATGTATACATGTTTCATGAGGGATTTAGTAGTGTTT AGTATTGTATGTTTAAAAGAATAATTGTTACTCTTGCTTCAATTTTTCTTAAGTTATTGTGTGTGATGTTTTATTCTTGT TATGAAGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCA GGCTCAGTCTGGAACTGGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCC AGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAACAGATTGAGAAGGTCATGCGAGCACTTGGTGATTACCTTGGT GTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCACACAGTTGT TGGCACTCCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCTGATAGCATAAAGATGTTTGTTTTGGATG AGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGGTTTGCCAATTTACTTGTATTCCACTTGTTAAAACTGAGTCT GCGATTTTAGCCTCGGCTGTGCTATACTTTTTTACCTTCTGAATTCCAGTGTTTGTAAATATCTTGGCAGTTTGAAGCAT GAATATCCGTTTGTTGATAAAATGCTTATAAATTTCATTGGGTGAAATCTTTATGCAGTGGTGCCTACTATTAGTTAAAA GTATATATTCTTTCAATAATTGTGAATATTTACGTCGGTGTTGCAGATCTATGACATCTTCCAGCTGCTGCCAGGCAAAA TTCAGGTTGGAGTGTTCTCTGCTACGATGCCACCTGAAGCACTTGAGATTACCAGGAAGTTCATGAACAAGCCAGTGAGA ATCCTGGTAAAGCGTGACGAACTGACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGAGAAGGAGGAGTGGAAGCT GGAGACACTATGCGACCTCTATGAGACCTTAGCTATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACT GGCTCACTGACAAGATGCGGAGCAATGATCACACCGTCTCAGCCACCCACGGTGACATGGACCAGAACACCAGGGACATC ATCATGCGTGAATTCCGGTCCGGCTCCTCTCGAGTTCTCATCACCACTGACCTCCTGGCCCGTGGTATTGACGTGCAGCA AGTGTCTCTAGTCATAAACTATGACCTCCCAACTCAGCCTGAAAACTATCTCCATCGTATTGGTAGGAGTGGGCGTTTCG GAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTG ACTGTGGAGGAGCTGCCATCCAATGTTGCTGATCTGCTCTGATGAGTTAAATTTTTGCTCTCTGTTAAGTCATCGGGGAT TTTTCTGCTGGACAAGTGCTATTTTAAGTTATTCAGGTCTTCTTTTTAA
CDS sequence (LotjaGi3g1v0420900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGTGTTGCTCCCGAAGGATCTCAATTTGATGCTCGCCAGTATGACGCTAAGATGAGTGATTTGCTTTCTTCTGA TGGGCAAGATTTCTTCACCTCATATGATGAAGTCTATGATAGCTTTGACGCAATGGGATTGCAAGAAAATCTTCTGAGAG GCATTTATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTG ATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGT TCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAACAGATTGAGAAGGTCATGCGAGCACTTGGTGATT ACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCAC ACAGTTGTTGGCACTCCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCTGATAGCATAAAGATGTTTGT TTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCAGGCAAAA TTCAGGTTGGAGTGTTCTCTGCTACGATGCCACCTGAAGCACTTGAGATTACCAGGAAGTTCATGAACAAGCCAGTGAGA ATCCTGGTAAAGCGTGACGAACTGACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGAGAAGGAGGAGTGGAAGCT GGAGACACTATGCGACCTCTATGAGACCTTAGCTATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACT GGCTCACTGACAAGATGCGGAGCAATGATCACACCGTCTCAGCCACCCACGGTGACATGGACCAGAACACCAGGGACATC ATCATGCGTGAATTCCGGTCCGGCTCCTCTCGAGTTCTCATCACCACTGACCTCCTGGCCCGTGGTATTGACGTGCAGCA AGTGTCTCTAGTCATAAACTATGACCTCCCAACTCAGCCTGAAAACTATCTCCATCGTATTGGTAGGAGTGGGCGTTTCG GAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTG ACTGTGGAGGAGCTGCCATCCAATGTTGCTGATCTGCTCTGA
Protein sequence (LotjaGi3g1v0420900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGVAPEGSQFDARQYDAKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDV IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH TVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVR ILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDI IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNV TVEELPSNVADLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 407 | 389 | 1.4E-232 | – | |
| PANTHER | 19 | 407 | 389 | 1.4E-232 | – | |
| Gene3D | 30 | 248 | 219 | 3.9E-66 | – | |
| ProSiteProfiles | 40 | 68 | 29 | 10.321 | ||
| CDD | 44 | 242 | 199 | 2.97351E-134 | – | |
| SMART | 59 | 256 | 198 | 1.4E-54 | ||
| Pfam | 65 | 226 | 162 | 1.0E-39 | ||
| ProSiteProfiles | 71 | 241 | 171 | 28.359 | ||
| SUPERFAMILY | 109 | 394 | 286 | 2.83E-73 | ||
| ProSitePatterns | 187 | 195 | 9 | - | ||
| Gene3D | 249 | 413 | 165 | 2.4E-58 | – | |
| ProSiteProfiles | 252 | 413 | 162 | 26.06 | ||
| CDD | 253 | 383 | 131 | 2.34802E-61 | – | |
| Pfam | 266 | 374 | 109 | 5.2E-29 | ||
| SMART | 293 | 374 | 82 | 2.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0420900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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