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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0569400 |
| Transcript ID | LotjaGi1g1v0569400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110231950..110235440) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAGTGAAAAAACATGAATCCGCGGTATTTTGTTGGTTTTGATAGATTGAAGGCTAGGTTTTGAAATTTGAATTTGA AAAAAGTGGATAGGGATGAACAAAAAGGGAAGCTCGTTCATCATTGCGTGGCATGATGATGACGACGGACGCAGAAGGAA GGTTACGTTGCTGGTTACCATCTCTGGAATTAGGGATAGGGTTCCTGAATCTGTATTTATAGGCCTGGAATTCAGAGCCA GATGATGATTACAGCCAACCCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGCCTCATATCTATCAATCGATTCC TTCAACCATGTCTGAATCTGATATGGGTAGCAACAGAGATCATCACTCCACTCTTGAGTTCCAACTGCTGCAACCTCAGC CACAGCTCCAATTGGGGTTTCCTGCTCCACCCTCCAACTTCAACGGAGGAGATTTTGCTGCTGCTGCTGCTGCTGATGAT GATGTTGTGATTGCTCTTCCTGCACCAGCCCCAGTTGGGTCTTCATCGGTGCCACCGGTGAAGAGGAAGAGGGGAAGGCC CAGGAAGTCGGCCGCCACCAACACCAACACCAACACCATCACCACCCTTGCCATTTTCCAGTCCGGTGGTCCTGTTACCC AGCCCGGTGAGGCCTCAGCTGGTGGTACTTCCGGGAAGAGGCCCAGAGGCAGACCTCGCGGTTCTCGCAACAAGAAACGC TCTGGTAACTGCTATTTCCCCCTTTTCTCTTATGCTGTTGATGCCATGCTTTTGTTTTATAGAGTATTTGTTTATTTTGT TTGTTAAGGCTTTCAACTTAAGAGCAATTTTTGAAAATATAAAAGAAAATTGAGGAATTCCGATCGTAACATGTTAGTGT TTGTTTTGACTTGTTCTGGATCTGGGTATGATTTAGTTTTTCAGGACATGTTCAATTTTTGGATTCCCCATCCTGCAGTT TGGGTCACTGTAAATTTTAAATTCTAAAGTGCAATTGAAATGATGGGTATTTGATATATTTAATCTATTTATTTGCCGGA TCTAGAAATCTGGGGGGGACCTGATCCATCTGGATATCGATTGCCTGATTTTTTTATAATTACTCATTTGCCTGTGAGAC ATGTGCTGCTCCAATTTATTTTGTGAATTTTCTTATAGCCTGCCCTGAAAATGCAATTTCCTATATGTTTGCTACCATTT AGTATTCCCTTACTTTCTCATTTGCATGTCATATTAATTGCAAATTTGTTATTTCTGCAGAATCAGAAGGAATTAACGTC ACTCATGATGTTATTACTGTGAAACCAGGAGAGGTAACTGCTTAATCTGATAGATTATGTGAAATGCATGGATGGAATTA TTTTCTTTGAAAATGACTGCTGTATTGTCTTCTATTTTCAACAAAATCATGTTTTCTTTTTGAAATATTCCTTGTTCAAT AACTTTTGATTTATGCACCTTATGGATACATCTATGCTATAGTTTACTTTGATGAATCTTGTTGGTTCCGAAAGTGATTT TGTTATTGTTCAGCTTCTCCACTTTTTTCTCTTTGACAACTTATGTGATTTGATTGCTAGCTAGTTTTTCTTGGAGTTAA TGGGAAATAATGGAAAGATTTGGACTTTTTTCTTTTTTTCCTTTTCACTTGGCTATAGAATTTCATTATTTTTAGTTTTG TTTGATGTTGTCATTGCTTAGATTCCTTTATTTATTTCATGTCACTTCCCTGTCATATTTATTTTACACTATTGAAATAA TGAAACAATATTTTCAACAACACTTTCTGGTTGGCCTGTTTGGGTGTGAGGGTTATTAGAACAAACTTTGAATCTTTAAG AAGTGAATATTAGTATCAAATATGATGGTCAGATTTACTGAATGGTTCTATGCAAAGCTTATTTTATAGCCTTGTGTGTT TTCACTTATTTATCACTTTTACTTTCATGCCTTGATTTTTCATTATAGTGTAGTTATTTATCTTTCTTGTCTTCCATTTG GGGAAAAAGTTGGTTTAAACTCTAATAATCTCCCAGCATTTATGTTTTATTTCTCTTCAGACCAAATATTAAACTTATTT CTTAATATGTTTTGACATTCAGGACTTGGCGGCAAAAATCATGGACTTTTCCCTGAGTGCTCCAAGAGACATTTTCATTT TATCAGCAACTGGATCCTTATCCAAGGCTACAATTTGTCAATCTTCGTCATCTGGTGAAAGGGTGACATATGAGGTTTGT AAAAGTCGTTCCAATTTTTCTTATCATCCTTTCCTTTGACCTTACCTTCATGCCAAAATCATGTGTACCATCCATTAGCT GTATTACTGTTAGTGTATACGTCTTTTGTCGATCTTAAGCAAATATCATTCTTTACCCTGGTGAAAGTACATTTTGACCT CAATAGTTATTCCACACTTTTATGAGAAAGTCAACTTCAGAAGTTTGCTCAATATCAAATTGTTGTTTTATGTGTATGGT TTGCTACCATTTTTCTATATTAACAACTGAGACTGATTAATGTATATTAACAACTGAGACAGAGTAATGTGGGTGTTGCC TTGACCATTATAAACAAGTTATACATGCCCTAGTGGCTAGTGATGGTCAATAGATCTTGGTCTCATTTTGTGATATTTTG GTTTTTCAGGGGCGATTTGAAATCCTTTCCCTTACTGGCACTTTTTCTGTTGCTGAAGATGGTAGGGAGGACAGTAGAGC TGGGGCATTAAGTATATCCTTTTCAGGGTCAGATGGCCAGGTTTTGGGAGGTGCTGTTGCAGGTCTATTAATAGCTGCTG CTTCTGTTAAGGTACAATTTTTGTTTTCTGATTTGTGTTTGTTATATCCAGTCATTTAAAAGAAGTATCCACAATTCCTC ATGTTTGTACTTAATCATTATTTGTGCATGTTGAATCCCCAATAAGATTTTCATCCAAATTCCAACTTATTTTCTTCTTG AAGCATTTAGTTGTATTTGGCACCCTAATGGCAAGTCTTGGAAATAACCTATCCATTATTGTTAGTTTGCTTGTTCTCTG AACATGGTGTGTATTTTGTAGGTATTCTTAGGGAGTTACAAGTCTGTGAAGCAGACAGGTACTGCCCAACCAAGGTTTGC AACAGGTGGCCAAAGTAGCTCACCATCACTAGGCAGTGATTCGTCAGGTGGGCTTGGAAGCCTTAACTAGAACAGGAGCC TCCAATAACAATAACGCACCAGAGAGCATTCCAGGCATGCCCTGGAAGTAGAGCTCTACTCTTTTTGCTTCTTTGTGTAA CATTATCTTTATGTAAGATTAGTAAAACATTTGAGGATACATTATACATTCTTACTTTAATATTATTGGTGATTGCAAAC GACTTGTCTAATCTTTCTGCACTGTGGTGATTCAAGAGGTTCATGCTGGATTAGTTTGTGGTCTCGGATCATGTAGGATC ATAATATGGCAGTAACTTTGTCATCCTTAAGTGTAACTTGTTGTTTGCTGC
CDS sequence (LotjaGi1g1v0569400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAATCTGATATGGGTAGCAACAGAGATCATCACTCCACTCTTGAGTTCCAACTGCTGCAACCTCAGCCACAGCT CCAATTGGGGTTTCCTGCTCCACCCTCCAACTTCAACGGAGGAGATTTTGCTGCTGCTGCTGCTGCTGATGATGATGTTG TGATTGCTCTTCCTGCACCAGCCCCAGTTGGGTCTTCATCGGTGCCACCGGTGAAGAGGAAGAGGGGAAGGCCCAGGAAG TCGGCCGCCACCAACACCAACACCAACACCATCACCACCCTTGCCATTTTCCAGTCCGGTGGTCCTGTTACCCAGCCCGG TGAGGCCTCAGCTGGTGGTACTTCCGGGAAGAGGCCCAGAGGCAGACCTCGCGGTTCTCGCAACAAGAAACGCTCTGAAT CAGAAGGAATTAACGTCACTCATGATGTTATTACTGTGAAACCAGGAGAGGACTTGGCGGCAAAAATCATGGACTTTTCC CTGAGTGCTCCAAGAGACATTTTCATTTTATCAGCAACTGGATCCTTATCCAAGGCTACAATTTGTCAATCTTCGTCATC TGGTGAAAGGGTGACATATGAGGGGCGATTTGAAATCCTTTCCCTTACTGGCACTTTTTCTGTTGCTGAAGATGGTAGGG AGGACAGTAGAGCTGGGGCATTAAGTATATCCTTTTCAGGGTCAGATGGCCAGGTTTTGGGAGGTGCTGTTGCAGGTCTA TTAATAGCTGCTGCTTCTGTTAAGGTATTCTTAGGGAGTTACAAGTCTGTGAAGCAGACAGGTACTGCCCAACCAAGGTT TGCAACAGGTGGCCAAAGTAGCTCACCATCACTAGGCAGTGATTCGTCAGGTGGGCTTGGAAGCCTTAACTAG
Protein sequence (LotjaGi1g1v0569400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSESDMGSNRDHHSTLEFQLLQPQPQLQLGFPAPPSNFNGGDFAAAAAADDDVVIALPAPAPVGSSSVPPVKRKRGRPRK SAATNTNTNTITTLAIFQSGGPVTQPGEASAGGTSGKRPRGRPRGSRNKKRSESEGINVTHDVITVKPGEDLAAKIMDFS LSAPRDIFILSATGSLSKATICQSSSSGERVTYEGRFEILSLTGTFSVAEDGREDSRAGALSISFSGSDGQVLGGAVAGL LIAAASVKVFLGSYKSVKQTGTAQPRFATGGQSSSPSLGSDSSGGLGSLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 231 | 231 | - | – | |
| PANTHER | 58 | 264 | 207 | 6.3E-66 | ||
| MobiDBLite | 59 | 136 | 78 | - | – | |
| PRINTS | 70 | 82 | 13 | 1.2E-5 | ||
| PRINTS | 72 | 82 | 11 | 2.2E-5 | ||
| SMART | 72 | 84 | 13 | 0.42 | ||
| MobiDBLite | 81 | 111 | 31 | - | – | |
| PRINTS | 106 | 125 | 20 | 1.2E-5 | ||
| ProSitePatterns | 114 | 125 | 12 | - | ||
| PRINTS | 115 | 126 | 12 | 2.2E-5 | ||
| SMART | 117 | 129 | 13 | 4.7 | ||
| ProSiteProfiles | 133 | 277 | 145 | 34.162 | ||
| Gene3D | 140 | 269 | 130 | 5.3E-13 | – | |
| SUPERFAMILY | 141 | 258 | 118 | 4.97E-24 | – | |
| CDD | 143 | 254 | 112 | 1.14218E-25 | ||
| Pfam | 143 | 254 | 112 | 2.4E-23 | ||
| Phobius | 232 | 251 | 20 | - | – | |
| Phobius | 252 | 290 | 39 | - | – | |
| MobiDBLite | 262 | 290 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0569400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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