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Lj1g3v3404290.1

Overview

Field Value
Gene ID Lj1g3v3404290
Transcript ID Lj1g3v3404290.1
Lotus japonicus genome version MG20 v3.0
Description AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 233 233 – –
PANTHER
PTHR31500
22 255 234 1.90E-58 –
MobiDBLite
mobidb-lite
61 138 78 – –
PRINTS
PR00930
72 84 13 1.20E-05
IPR000116
PRINTS
PR00929
74 84 11 2.20E-05
IPR017956
SMART
SM00384
74 86 13 0.42
IPR017956
PRINTS
PR00930
108 127 20 1.20E-05
IPR000116
PRINTS
PR00929
117 128 12 2.20E-05
IPR017956
SMART
SM00384
119 131 13 4.7
IPR017956
ProSiteProfiles
PS51742
135 279 145 34.299
IPR005175
SUPERFAMILY
SSF117856
143 260 118 4.97E-24 –
Gene3D
G3DSA:3.30.1330.80
145 262 118 7.00E-28 –
CDD
cd11378
145 256 112 4.99E-25
IPR005175
Pfam
PF03479
145 256 112 2.40E-23
IPR005175
Phobius
TRANSMEMBRANE
234 253 20 – –
Phobius
CYTOPLASMIC_DOMAIN
254 292 39 – –
MobiDBLite
mobidb-lite
264 292 29 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000785
Cellular component Chromatin The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v3404290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3404290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.