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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0198500 |
| Transcript ID | LotjaGi2g1v0198500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63348952..63355051) extracted from Lotus japonicus Gifu genome v1.2.
GCAATATTACGAAACTACCTACCCTTGTTTTCTCTCTCTGTAATAATAATATCTCTCTCTCTCTCTTGAGATGCTGTAAT TCCAATTCCATTTTCGATTTTCGAATCTCTCTCTCTCTCTCTCCATGGACCCATCCTCGATCTCCTCACCTTCAGCTTCT GCTCCGCCCACAGCCACCGTCCCCTTCGCCGCCGACCCCAACAACCACCCTCCTCCTCCGCCCGCTCCCGCCGATAATCC AGCCCATCCACCCTATGCTGAGGTAAACCCCAAACCCAAACCCAAACCCACACACATCTCATAAATTGAACTAAAATCCC TAGATTCTCTCCCTTTTCTTCTTGTGGTTTCTTCTTCATGTTCTTGTTTTCTTTATCTTCTTGTTTTGTGTTGCAGATGA TATACACAGCAATTGGGGCTTTGAAGGAGAAAGACGGTTCGAGCAAGAGAGCGATAAACAAGTACATAGAGCAAGTCTAC AAGGACCAGCTCACTCAGTCGCACGAATCGTTGTTGACTCACCACCTCAAGCGTTTGAAGACCAACGGAATGCTCGTCAT GGACAAGAAATCTTACAAGCTACCTGGATCTGCGCCACCGATACTTCCTCCGCCGCCGGAGAATATCGCCGCCGGTGCCG GTGCTTCTCCTTCTCCGGCATCCAGGCCGAGAGGTCGTCCAAGGAAGGTTCAACCCCCCCAGCACCTGCCCCAGCCCCTA CCCCTGCCTGGGGTTCAACTTCAACCACAGCTGCCGCCGCAGCAGCAGGTTCAGCCGGAGGCGCAACCGCAACCGCAAAA CCTGCCGCCTCAGTTCAACAACGTGCAGCAGAATGCTGCTCCTGCTCAGAATGCCGAGCCTGTTTGGGCTGCGCTTGGGC TTGCTGATGATCCCGTGGCGGTGCCGGTGACGGTGCAGGTGCAGGGAGAGACATCGGAGGGGACAAAGAGGCGTCCGGGC CGTCCGAGGAAGAGTCCGGCGGTGGTGGCGGCAGGGGTCCAGCCTGGCCAACCTGGCCCGTCAAGCGCGACGCCTCGCCG GAGGGGGCGTCCACCTGGGTCTAAGTCTGCTAAGAAGCTTGGCCGTCCTAAGGCGGAGCCTGCTGCTGCTGCTGCTGTCG CAGCGGATCCCAGCTTGCCGAAGAGACGTCCAGGCCGTCCGCCGAAGAATCAGCCGGGGGCGAACCCAATTCCCTTTGCT GCGCTTCCTCCTGAGGCGCCGGCGGTGGAAGCTGTGGCGGCTCCGGAGGGTTCAGGGGCTAGAAGAAGAGGAAGGCCGAG GAAGAATGCTTATGCTGTGGTGGTGGCCAGTGCTGTTCCTGTGACTAGTGTTGCTGGGCGTGGCCGTGGTCGTGGCCGGC CACGTGGAAGTGGAAGGAAACCTGGTGGTGGTTTGACTATGCAGCACATAAGACGCGCAGGGAAAAGGCCGGTGGGGCGC CCCAGAAAGGTGATACATTTTGTTTTTATGTTACAATGTTGTTTACATTAAGATGCGTTTTTCTTCTTTTATGCTTGTTA TGTGCAAGATCTATCAACTTATTTGTAGTTGAAGTTTGATTTGTGTTTTGGGTTCTTGTTTTAATTTTGGATACTTTAAA ATCTGTACTAGAAGATTTTTTGCAGCTGTACTAGATTGATTGCGTATTACTAATATTTATTAGCTTATCCCTTTTGACTT TTACAGATATTTATTTTTGTATGTTGTTTTTGGGGGATAAACTTGATGTTTAGTTTTTGTAATGTGTTTAATCAGAGAAT AAAACCAGTAATATCTATAAATTTATATATTTCATATAAGATGTAAGTTCCAATTTTTTTCTGTTTAAACACAGATGGTT TTTTTGGGTTATTTTTGGATTGTTTAAATACTGCATCACCAGGGACCATATTTATTTGAAGAAAACTTTGTAGCTTTATG TATCAAATCTTTTTGGCCCCTTAAACATTGGTTTTATTTGTTTTTTCGGAAATGATGTTAATGACTGAATGCCTTTTATA CTAACATCTGTTTGAAAACTAGTAATTTTAAGTTTAAACTGCAAATTTATTTCTTAGAACTAGTAATTGTGACATGCAGG ATTTAACATGAGTGAGTTATGAAAAAGAAACTTTTGTGATAGTGTCATTATCTTTTGAAAAGCTGTGTTATACTGCAAGC TTATTTTGTTGGACTATTGTGACATGAGGAACATGAATGAATTAAGATTTTACAAGCAAGCTCTACATCAAAATCCTTGT ATGATTTAAAATTGTTTTAAATCATTTAATTTTTTTTTACTTATACAAGAAAATAAAGTTATTATATCTGTTTCTGTCTT TTACTTTTTTTATTGTTTAAAGTACTTTATTTTCCTTGGTTTATTACATTTCCTACTATTTTTGGACTTTTAAATTTATA GAAATAGTTGTTATTTGCAGTTTTTTGGACTGTTTTAATGTTGCTCACTGCATTTCCCATGGACCATTTCAATTAATATA AAAACAGTGTAGCTGTATGCACCAATAGCTTTTATAATAAGTGATTGTTTACTGTTTATTTTATTTCTAGGTTGAAATCT GGTTTGGAGTTGATTAACATTAATAAGTGAAAGTATTTTGTTGAAATATCTGTTGTAAAGCTGTGAGTTTTATGTTTAAA CTGCAAGTTGACTTTGTAGGACCAGTATGACCTTTAGAATTTTACATGAGTGAATCATGCAGATTGAAAGGATCTTTTTT TATTATAGAAAATCATATTCAATTTCTAATTCCAAATCTAAGTTTGTGTTATTGCTTCTGTTCCCAGTATACTTAATGAA GTTACTCTTTTTGTGTTTAGAATTGAAATGTTTGGATTACTCTATTATTGTTAGATATCATCCTTTTTTCTCTTCTGCTT TCAATTTACATATTTTTGGGGAGACGAAAAATTTCTGCTCTTACCCTTAGAAACTTTATGGATTAAGAAGAGTTTGTGCA AATTTTGTCTCAATTTTTTTTGTATGATTTAAATTTGTTTTACATTCTAAATTCAGTAGTTGCTGTTGTGTTTTTGTAGG AAATGTTTCATAATCACTCTATCATTGTTAGATGTCCTGTTTTTTTTTCTTCCCTCTGTTTGCTCTCTAAATGTTTCATA ATCACTCTATCATTGTTAGATGACCTGCTCTTTTTTCCCCTCTGTTTGCTCTCTAAATTTAGAGGAATTGTTCTTATTTA CATATTTTTTGCTTGATTTTTGGTGGAATGGGTTACAGCGTTTGTGATAACAAATTGTTTAGAAAAAGAAGCATTGCAAA TTGTTTTCAAATTCACCTCTGTAGTTTGTTGCCATTGCAACACTTTTGGTATAGAGTTACTTTGATTTGTTGGTACCAAA ATGGAAATAACTGTATAGAGACAAATTGTATAGTACTTTTGGTCCCTGTACATGTCATTCATTTTTAATTTAGTACCTTG ACTGACATCACTATTGTGTTATAAGTTATAACTCCAACGATGCTGTTATAATTGCAATAGACTACACGGACCAAACTGAA TTATTTTATATGTAGTGATTAAATTGAAAACATTTTTTTTTTTTTGTTACATCGGAAAATATTGAAAAACATTTATTTAG TTATATTTGTATAAGGATTGGAATTAGTGGTGTGTATAAAAACCAAAAGTATGTTTTGATCATTTTTTTCTTTTCTAAAT GTTACTTATTTGCATATTTGTTTTTGTGTTTAGAGTTGTGATGTCTGAATGTTTTTTTTATGGTTTTATATTTTTAGTTC TTGAATGTAACTCTCATTTTCACTTTATGAAAGAAGTTTTTAATTTAGACATAATATGTACAACTGTTTTGAACTTCACC CCTGCTGTTTTTGCCATTGTTACACTGTTACATTGTGTAGAGTTACTGTGATTTATGGAGACCAAAATGGAAATGACTAT AAAAGGATTATTTTATATGAAGTGATTCAATTGAAAACTTCTATTTATTTATGTTTGTATATGGATTGGAAGTAGTGGTT CAGTGTAAGAACCAAAAATATATTTTAATCTTTTTCTATTTAAATTGGTTTTCTATTTCTACTTGATTCCTGCTTGGTTT TTCTATTTCCTACATCGTTTTCTGCTTCCTTTTCTATATGAAAGGAACTTAATGGATTATTGAAGTGGAGTAATTCTTAA ATTACACATTTGCAATTAGGCAAACCAATTAAAAACTTAAGATGTTTTAAGATAATAATGCGAGCATAACAATTGTGCTG AAGCTTTTTTGATATTGTCTTGCATTTTGATTGGTTCTGCCCAATGAGCACAATGCTCTTATAAGAATTGTTGATGGAGA AGCATGTCCACATTGATTGGTTCTGCCCAATGAGCACTATGCTCTAATTCAGAGAAGTATGTACTGTATTAGTTTTAGAT GTCCCTTTTTTGTTCTTAGATTTCCTTATCTGAATTACTCTATTAGTCACTTTAGTCCCTGTGCGAATTTTGTTTTTTAT TTAGAATTTATGTGGACAATTGTTTTCAAATTCAACCCTGTTTGCTGTTACTATTTTAACACTGATAGTGGTGCTACTAT GAATTATGAGGACGAATATGAAATGTCTGTATAGTACTCGTTCATTTTTAATTTGATCGTTTCACATGATTGTGTTATAA CTCCATAATGTTGAAATTTGTATGAAGGAGGTGAAATACATGGATATAATTTTAGGAAGAGTAAATGAGAAATTTATTAG GATAGTATTTTTATTCTTTACCAAACACACTTAGTTAGATGGTAGGTCTATTTATGAGTAATGTTCACTGTCTTAATGAG GGGTGGTAATTGTGAGTAATATTCATACATGTGAATGCTGCATCTTATTTTATTACAATTTTTAGATACATTCAACCTAG TTTATTCTGTATTTATATTAACTGTTCTGATTTGCATATTTTATTCCATCATTTTGATTGGATAGGATGCAACTGCTGCT GCTGCTAGTACTTCTCAAAATGTTGCTAATGAAGATCTCAGGAGGAAGCTGGAACACTTTGTAAGTTGAAATATTCTTTC TTTGGTTTGAATTGTCTAGTATTTGTTATATTTTAAAAAATTGTAATTTTTCATTTTCTACCCATGAATTTGCAGCAATC AAAAGTCAAGGAGTCTGTTGCAGTGCTGAAGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAG AGCTGGAAGAGCTGGGAAACATGGACCTTAACGCACCCTTGAGGGATGAAACACTTCCACAGCAGCAACAGCCGCAGGTG CTGCCGCAAGAGGCACAGCCACAACAGCAGGTGCCGCAACAGCAGGTTCCGCCACTGCAGCAAGTACCTCCGCAGCAACC GGCATATCAACAGCAATATCCGCCATTTCATATGCAGCAGTACCACCACCTGCAGCAGCAGCAACCATTTCAACATCCTT AGGAATCAGGTCCAAGGTAGGAGGAATTAAGTGGTCCTCAATTTGATTATGAAGCTAGGAAAGAACTACATGGTCTTCAA TTTAATTATGAACAATTTGTACAAGTGTTTTAAGTTAACAAGGCACATGAGGTGACAGATTTGTAAAGGGAGTAGGAGGT AGCAGAACTGGTTTTTCTTTTGAGAGTGAAATGTGTCTGTCCATTTTAGTTGGTTGTTGTGAACCTGATTTAGTTTGACC ACCCCTGAATTAATTCTTAGATTTTAGAGTACTGATGATTCTGTTATTCAAGTTTTTCATCTATCTATTTAACTCACATG TAATTCTGTGGTTCTTATTTCTGGATGATTTATACTTAGTGCATGTTTGGGAGTTTTGTTTACAATTGATTCTAAAGCCA GAATTAATTCTGAGAAGAGCCTTATGAGTTGCTTCTGAATTTCAGAATTGATTATGAGAAAATAGAAGCTGAGATGCAAT TAGGTGATGAAACTATTAATTAGACTTGAAGTGAAAAGTTAGGATTGGTTACTAGTCAGTTAAAAACATGCTCGTCAAAG TTGAGTGAACTTTATTATTGTTAACGTTTTCTAATGTATCGTTAGCTTTGGGATTCTTTTTGCACATTTCAACCTTGTTT TATTATAGAAGCAAAAAAAT
CDS sequence (LotjaGi2g1v0198500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCATCCTCGATCTCCTCACCTTCAGCTTCTGCTCCGCCCACAGCCACCGTCCCCTTCGCCGCCGACCCCAACAA CCACCCTCCTCCTCCGCCCGCTCCCGCCGATAATCCAGCCCATCCACCCTATGCTGAGATGATATACACAGCAATTGGGG CTTTGAAGGAGAAAGACGGTTCGAGCAAGAGAGCGATAAACAAGTACATAGAGCAAGTCTACAAGGACCAGCTCACTCAG TCGCACGAATCGTTGTTGACTCACCACCTCAAGCGTTTGAAGACCAACGGAATGCTCGTCATGGACAAGAAATCTTACAA GCTACCTGGATCTGCGCCACCGATACTTCCTCCGCCGCCGGAGAATATCGCCGCCGGTGCCGGTGCTTCTCCTTCTCCGG CATCCAGGCCGAGAGGTCGTCCAAGGAAGGTTCAACCCCCCCAGCACCTGCCCCAGCCCCTACCCCTGCCTGGGGTTCAA CTTCAACCACAGCTGCCGCCGCAGCAGCAGGTTCAGCCGGAGGCGCAACCGCAACCGCAAAACCTGCCGCCTCAGTTCAA CAACGTGCAGCAGAATGCTGCTCCTGCTCAGAATGCCGAGCCTGTTTGGGCTGCGCTTGGGCTTGCTGATGATCCCGTGG CGGTGCCGGTGACGGTGCAGGTGCAGGGAGAGACATCGGAGGGGACAAAGAGGCGTCCGGGCCGTCCGAGGAAGAGTCCG GCGGTGGTGGCGGCAGGGGTCCAGCCTGGCCAACCTGGCCCGTCAAGCGCGACGCCTCGCCGGAGGGGGCGTCCACCTGG GTCTAAGTCTGCTAAGAAGCTTGGCCGTCCTAAGGCGGAGCCTGCTGCTGCTGCTGCTGTCGCAGCGGATCCCAGCTTGC CGAAGAGACGTCCAGGCCGTCCGCCGAAGAATCAGCCGGGGGCGAACCCAATTCCCTTTGCTGCGCTTCCTCCTGAGGCG CCGGCGGTGGAAGCTGTGGCGGCTCCGGAGGGTTCAGGGGCTAGAAGAAGAGGAAGGCCGAGGAAGAATGCTTATGCTGT GGTGGTGGCCAGTGCTGTTCCTGTGACTAGTGTTGCTGGGCGTGGCCGTGGTCGTGGCCGGCCACGTGGAAGTGGAAGGA AACCTGGTGGTGGTTTGACTATGCAGCACATAAGACGCGCAGGGAAAAGGCCGGTGGGGCGCCCCAGAAAGGATGCAACT GCTGCTGCTGCTAGTACTTCTCAAAATGTTGCTAATGAAGATCTCAGGAGGAAGCTGGAACACTTTCAATCAAAAGTCAA GGAGTCTGTTGCAGTGCTGAAGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAGAGCTGGAAG AGCTGGGAAACATGGACCTTAACGCACCCTTGAGGGATGAAACACTTCCACAGCAGCAACAGCCGCAGGTGCTGCCGCAA GAGGCACAGCCACAACAGCAGGTGCCGCAACAGCAGGTTCCGCCACTGCAGCAAGTACCTCCGCAGCAACCGGCATATCA ACAGCAATATCCGCCATTTCATATGCAGCAGTACCACCACCTGCAGCAGCAGCAACCATTTCAACATCCTTAG
Protein sequence (LotjaGi2g1v0198500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPSSISSPSASAPPTATVPFAADPNNHPPPPPAPADNPAHPPYAEMIYTAIGALKEKDGSSKRAINKYIEQVYKDQLTQ SHESLLTHHLKRLKTNGMLVMDKKSYKLPGSAPPILPPPPENIAAGAGASPSPASRPRGRPRKVQPPQHLPQPLPLPGVQ LQPQLPPQQQVQPEAQPQPQNLPPQFNNVQQNAAPAQNAEPVWAALGLADDPVAVPVTVQVQGETSEGTKRRPGRPRKSP AVVAAGVQPGQPGPSSATPRRRGRPPGSKSAKKLGRPKAEPAAAAAVAADPSLPKRRPGRPPKNQPGANPIPFAALPPEA PAVEAVAAPEGSGARRRGRPRKNAYAVVVASAVPVTSVAGRGRGRGRPRGSGRKPGGGLTMQHIRRAGKRPVGRPRKDAT AAAASTSQNVANEDLRRKLEHFQSKVKESVAVLKPHFNHESPVTAIAAIQELEELGNMDLNAPLRDETLPQQQQPQVLPQ EAQPQQQVPQQQVPPLQQVPPQQPAYQQQYPPFHMQQYHHLQQQQPFQHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 16 | 308 | 293 | 3.4E-73 | – | |
| PANTHER | 16 | 308 | 293 | 3.4E-73 | – | |
| MobiDBLite | 24 | 40 | 17 | - | – | |
| SUPERFAMILY | 35 | 113 | 79 | 3.77E-20 | ||
| Gene3D | 36 | 113 | 78 | 3.2E-16 | ||
| SMART | 38 | 105 | 68 | 8.2E-23 | ||
| ProSiteProfiles | 40 | 110 | 71 | 25.805 | ||
| Pfam | 41 | 103 | 63 | 2.6E-14 | ||
| CDD | 44 | 112 | 69 | 3.12811E-11 | ||
| MobiDBLite | 105 | 197 | 93 | - | – | |
| PRINTS | 135 | 145 | 11 | 5.0E-8 | ||
| SMART | 135 | 147 | 13 | 2.7 | ||
| MobiDBLite | 144 | 162 | 19 | - | – | |
| MobiDBLite | 181 | 197 | 17 | - | – | |
| MobiDBLite | 218 | 412 | 195 | - | – | |
| SMART | 230 | 242 | 13 | 48.0 | ||
| PRINTS | 257 | 268 | 12 | 5.0E-8 | ||
| SMART | 259 | 271 | 13 | 3.8 | ||
| PANTHER | 285 | 444 | 160 | 3.4E-73 | – | |
| PANTHER | 285 | 444 | 160 | 3.4E-73 | – | |
| SMART | 295 | 307 | 13 | 14.0 | ||
| MobiDBLite | 298 | 317 | 20 | - | – | |
| PRINTS | 332 | 342 | 11 | 5.0E-8 | ||
| PRINTS | 332 | 344 | 13 | 4.6E-6 | ||
| SMART | 334 | 346 | 13 | 2.5 | ||
| SMART | 362 | 374 | 13 | 31.0 | ||
| PRINTS | 364 | 375 | 12 | 4.6E-6 | ||
| PRINTS | 378 | 397 | 20 | 4.6E-6 | ||
| SMART | 389 | 401 | 13 | 0.77 | ||
| MobiDBLite | 458 | 530 | 73 | - | – | |
| MobiDBLite | 466 | 493 | 28 | - | – | |
| MobiDBLite | 508 | 530 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. | ||
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0198500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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