Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0003909

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description DNA ligase activity
Full defintion Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+.
Subterm of

Relationships

The relationship of GO:0003909 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0003909, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN
BiochemistryBiochemistry

Lubert Stryer · ISBN: 0716720094

, 1995 · 1150 pages

This book is an outgrowth of my teaching of biochemistry to undergraduates, graduate students, and medical students at Yale and Stanford. My aim is to provide an introduction to the principles of biochemistry that gives the reader a command of its concepts and language. I also seek to give an appreciation of the process of discovery in biochemistry.

Associated Lotus transcripts 9

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj1g3v3244630.2
– PREDICTED: DNA ligase 1-like, partial [Cicer arietinum] gi|502106786|ref|XP_004493055.1|
GO terms
2
Lj3g3v3033290.1
– PREDICTED: DNA ligase 1-like isoform X1 [Cicer arietinum] gi|502145536|ref|XP_004506069.1|
GO terms
2
Lj6g3v1330870.1
– PREDICTED: DNA ligase 4-like [Cicer arietinum] gi|502085757|ref|XP_004487997.1|
GO terms
2
LotjaGi1g1v0545100.1
– DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp|F4HPZ9|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr|G7KV95|G7KV95_MEDTR DNA ligase; Found in the gene: LotjaGi1g1v0545100
GO terms
2
LotjaGi1g1v0545100.2
– DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp|F4HPZ9|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr|A0A0L9TDF0|A0A0L9TDF0_PHAAN DNA ligase; Found in the gene: LotjaGi1g1v0545100
GO terms
2
LotjaGi2g1v0063800_LC.2
– Drug/metabolite transporter; TAIR: AT3G18200.2 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788; TrEMBL-Plants: tr|V7C7N7|V7C7N7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0063800_LC
GO terms
2
LotjaGi3g1v0485100.1
– DNA ligase; TAIR: AT1G08130.1 DNA ligase 1; Swiss-Prot: sp|Q42572|DNLI1_ARATH DNA ligase 1; TrEMBL-Plants: tr|A0A072UVT2|A0A072UVT2_MEDTR DNA ligase; Found in the gene: LotjaGi3g1v0485100
GO terms
2
LotjaGi6g1v0235200.1
– DNA ligase; TAIR: AT5G57160.2 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200
GO terms
2
LotjaGi6g1v0235200.2
– DNA ligase; TAIR: AT5G57160.1 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0051103
Biological process DNA ligation involved in DNA repair 1 11.11