Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj3g3v3033290 |
| Transcript ID | Lj3g3v3033290.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA ligase 1-like isoform X1 [Cicer arietinum] gi|502145536|ref|XP_004506069.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 50 | 111 | 62 | – | – | |
| Gene3D | 141 | 406 | 266 | 2.50E-93 | ||
| SUPERFAMILY | 144 | 395 | 252 | 2.09E-80 | ||
| PANTHER | 145 | 772 | 628 | 1.80E-304 | – | |
| PANTHER | 145 | 772 | 628 | 1.80E-304 | – | |
| Pfam | 162 | 337 | 176 | 2.40E-41 | ||
| TIGRFAM | 220 | 759 | 540 | 6.70E-153 | ||
| Coils | 229 | 249 | 21 | – | – | |
| CDD | 393 | 611 | 219 | 1.78E-137 | – | |
| SUPERFAMILY | 396 | 614 | 219 | 1.92E-53 | – | |
| Pfam | 404 | 608 | 205 | 1.20E-61 | ||
| Gene3D | 408 | 433 | 26 | 1.20E-29 | – | |
| ProSitePatterns | 428 | 436 | 9 | – | ||
| Gene3D | 434 | 557 | 124 | 8.80E-41 | – | |
| ProSiteProfiles | 510 | 646 | 137 | 42.42 | ||
| Gene3D | 560 | 615 | 56 | 1.20E-29 | – | |
| ProSitePatterns | 582 | 608 | 27 | – | ||
| CDD | 616 | 761 | 146 | 2.84E-90 | – | |
| SUPERFAMILY | 616 | 762 | 147 | 1.13E-46 | ||
| Gene3D | 617 | 762 | 146 | 1.00E-54 | – | |
| Pfam | 633 | 744 | 112 | 2.60E-22 | ||
| MobiDBLite | 742 | 776 | 35 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA ligase activity | Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+. | ||
| Molecular function | DNA ligase (ATP) activity | Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. | ||
| Biological process | DNA ligation involved in DNA repair | The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair. | ||
| Biological process | DNA biosynthetic process | The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. |
Expression pattern of Lj3g3v3033290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj3g3v3033290.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.