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LotjaGi3g1v0210000.2

Overview

Field Value
Gene ID LotjaGi3g1v0210000
Transcript ID LotjaGi3g1v0210000.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:31266641..31272553) extracted from Lotus japonicus Gifu genome v1.2.

GAAAAAATCAGTAATTCAATTCAATAATCAATAGCGGAGATTTGATCCCAAAATATGATGAAAAAAAAATAATTATTACC GCCAACAGGGAAACCTAAGAAAGGGGCACACCCTAACGCACCACGCATACCAAAACGAGAGGACCAAACTTGTTGCGCTA TACACATATAAACCAAACTTTGCACTTTGCAGCAGCAGCAATAGCCACTATCTGTGTTTCAGAGTCACAGCATGGCCGTC GTTGGAGTCCTCGCGTTACAGGGATCTTTCCACGAACACATAGCAGGCATGTTTGTCTTTGTTTTTCTGTCTCAATCTCT CTTTCACTCCCTCACGTTTGTTGTTGTTTGTGGCAGCGCTGAGGAAGTTAGGAGTGAATGGGGTAGAGATTCGGAAGCCG GAGCAGCTTCTCAACGTGAATTCCCTCATCATCCCTGGTGGTGAGAGCACTGCCATGGCTAAGCTTGCTGAGTACCACAA CTTGGTATCTCCTCTACCTATCATCACTCTTTTCTACTTTTTTTCTTCTCTTTTGGTTTATCCTTTTAAACTGATATATG TTGATGAGTGGGATATCAGAAATGTTGTTAGTAATGGTATTGATATTTGATAACACCTTATTTTGTGTAATTTGATTATC CATTTTGTTAATGTTGCTGTGTTGTCTACTTTTGTAAAAGTAAATGGTACAATTATGTGGAATGGTATAGTGTGCTTGTA CCTCATTTAGGGGATGTTTGCATCGTGTTCCATAGAGCAGAATCGTGTATCAAATGGAAAAGTTACTCAAGTAGCTTATG CACATACGCGATTCTGCTGCTCTTATGCGATTCTGCTACCGTCTCCAAACCCGGTATTAGTTCATGAAAGTACGTTTACC TAAGATTAATCCTTAAATGTGCATTTTGTCATTCAAATTAGTGTTTAAGATTTGTAACGCGTGGACTTGTCGCATTGAAG ACATGCATTTATTTAGGATCTTGCGCCTAATTTTTGTCGAAAAGTGACTAATATGATTGACGTTATATTTTAGGGGATTA ATTTGATTATTATCATTTTTTTGTGCTTTTTGATTGACATCCCATTGACATTAGTTGCCTCTATTACAAAGTGGTTGCAT AAAGTGATTAACTTTGTTTTGCAAAAAAAGCTCGTTATAACTTTGGTTGTATTGATTATGCTTTGTTGTGTTTTTTAAGT TGTGTGCAAAGAGTAAAATAGATAAAAGAAGTTACGAACTCTTGGCAGATTCTTTTCTTGCTTTTGTTTTTATTTTCTAT AGTTGGGATCAGCATGAGGGGTACAGAGAGGACAGATGATGGAAAGGGAACAAGTTTTCTGATTTTGTCTGTCTGGTATT GGTTTTGAATGACGTGGGTTTCTGGGGCTGAATTTTGTATAATTACTTTGACCCTTCCTGTGGAGCTTCCCCCCTCCCCC CCAACATTGTAATTTTATTCTCCTGACTAGGGTAATACTTCTTGCTTTGATTGTGATCACGCATGATAATTTTTGTTGAA TGTTTCAATTTATCAGTTTCCCGCCTTGCGAGAGTTTGTGCAATTGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTAA TATTCTTGGCAAATAAAGCTGCAGGTGGGTTGTTTCTCTCCTATTTCAGGGCCCTGTGTTGAATTTTAGACAATATCAAG TATTTCAATCTTATTTTATTTGTCACTTAAAGCATCTGTTAATGGTTTAAAAAGCTCAAATGGCAAACATGATTTCAGGA CAGAAGATTGGTGGTCAAGAACTGGTTGGTGGCCTTGACTGTACTGTGCATAGAAATTTCTTTGGCAGCCAGGTAATGGA CGTGCTGTGCGTTTTAAGCTGTATTTTGTTGAACAAACATAAATAGAACAAGAAGCCTAATTTAACCACAATGGGGAGCT ATGGACATGAAAAAATCTGCTTAACTCCCATTTTTTGTGAGAATAAAGGTATACGGTCATTCTGAATGGCCCATCATTTG ACACATGAGCTTTTCATAATAGTGCCAACTGATAGTTACGGGCATGACAGTCAGTGACTCACTGCCATTAGGGATAAGAA TCAAGCACTTACTAAGCTTTTCATTCCGCTCCATTCTTGATTCAGGTTTCTTATTATCTTTAATGTTCAAAATCTAAAAT AGCTGCTTAAAATTCAGGGGTTTTGCGGAGTTTATTTTGCCAAAACAAACTTCTTTTGTTCCAACATATTTGGCATTCTT GGCATTGTAACTGATAAGATTATTGGAGTTCTTATATGACATTCTAACTGATAAGATTCTTGGAGTTCTTATATGCATAT AAATAATATGTAATGCATAAAGCTACATGAAATTAAGGAGGAGAATGATGAGCTTGGCCTGAGAAACTAAGTTTTTGCTA CACTTTGATTCTCTTGGTCACATTTAACCAACAAATATATTTGTTCAGATTCAAAGCTTTGAGACAGAGCTTTCAGTTCC AGAGCTTGCATCCAAGGAAGGTGGCCCCGAAACGTTTCGTGGAATTTTTATTCGCGCCCCAGCAATTATTGAAGCTGGGC CAGATGTTCAAGTGCTGGCTGACTATCCTGTACGTTCTAACAGATTGTCCACTGCTGATTCCCCTACTGAAGACAAAAAG GTTCGTTATTTACATATGTAGAAATCTTCCAGCTTTCCTTTTTATGCATGTAAGACAAAAAATTCACTGATTGTAATTTA CTAACTTTTCTCACTAAAGTTTTATTTTTTTGTCACTGAAGAGTAAATATGCCATTGACATAGTAAAATTTAGTTTAAGC GTGGGTCATTTGTTGACTCTAGTTTTAGGTTGTGAATGATGGTTATTGGTTAGTTCCAGAGCTATTAGATTTTAAAAGGT TCATGTCTGATGAAGTTAACGATGATAAATGGCGAGAATGGACAGGATCAGATAAACATTATAAATAGTTGTGCATGTTG AAACTTCTTTCTGCAATGTTATTCACTGGCTAATTGACATATAAAGATATACCTAGGCACTTAATGTGTGCAATTATGTT TATGAAACTGAGATTTTGAGGATTGATATTAGAGGTGGAGGGCGGGGTGGCTCAGGGACATATTCACGCATGATAGGTAT TGGTGTGATCAAAGGAAGGTGGGAAGTTGATACTTTTATTGATGTGATCTCCCTTACCCTGGATCAAAGAACCCAAGTTA CAAGGAGAAAGAATGATTACGTAAATGCTTTCCCCAGGAATTCGAGTTTTGGTCTCTGCCAACAAAAACTAACTGCTCAA CTAACTTCGCTCATTTGCATATTCTCCCTCTATTTATGCCCTGCCTCTGCCACTGCAGTAACTAACTGTAGCATCTGTAA CACTATAACTATCATGGTCCAAGTCTAACAGAGGTTGGCCCACCTGGCTCTTAGTGTCCATCCTTATATTGCTTCCAGGT TCTTTTAATTCAGTGGCATAGCTTGGGGTCCTAGATAGTCTCATCCATGCAAATATGAATTTCTGATGGAGAAACTCAAA GAATAAAGGAGTAGAAAAAAGGGCATTACTTATAGCAGTGTTTTTAACAGTGTGCTATAGGGCGGTAGCGGCTCGTAGTG GGGCACTGGTTGCTGTGTAATTTTGCAGTTTAGAAGAGGATGATTGGTGATTCGTATTTAGGAAACTTTTATTTAAATTT TAACGTTTTTAGGTAGTTTAATTTAAGGCTTAGAGGCTTAAACTTCTTGATTTCCTTGACTTTTGTTGGCATTTATTTGA ATGTTTTGTTTAAGAAGCCTATGACTCTTATTGTCCATTATGGATGTCGTGAATTTTAAGTATGTTTTATCCTTTTGAGC ATTTATATATGTAATGTAAATTGTATTTAAAATTTAGCAGTGGCTAACCTCCTATGTCCTATACCCGCTATAGTGCTTTA GATTTGGCCACTACCGGGATTGACAACACTGATTTTTAAAAATAAATTATTACAAGGATATGAAGTTTCAATCTTTATAA GTTTGGGGACTATTATTGAAGGAATAACTGCTGAGAAGTTTCCTTCTTGTTTATCTACTTATTCTCCTTCAAACAGTTCT CTACTTTTGAGAAAGCATTTCATAGTAGTGTTACTTCAGGATATTTAGTTTCCAAACCCAATATGTTGGATTCATCTTCA TAGACACAATGAACTACTGATATACTTCATTATTTGGTTTGTTTGTCTTAATTAACATGGATTGGCAATTGGCCATAGCC TTTTTTGGCTTTGGTAGTTGAGGATAATCCTTGTTTTTATAATTAAACAATTGAATGCCCTTAGAGCATCTCCAATGTTA GTTCTTATTTCTTAGTTCTTAGCACTATTCATGTGAGTTCGTATTGCCACATGTGTTTAAGCAACTCTCAAACAATTTTG CTCCAACCATGAGTTCTTAGTTCTTACCACTATTCATTTGATCCCACCAACCACATTATTTGTACTTTTTATTTTCATAA AGTAATAAAACAAAATTCATAAAGTAATAAAGTAATTTGGATAAGAGAGAAATAATTAATATTTTAAGCTATGAACTCAA AAAGCAAAACTCCTTATATAAGAACTGAGTTCTTATTTTTAAGAACTAAGGAGTCCATGTCAGCACCTCCAATGGTAAAA TTCCTAGTTCTTAGTTCTTAACTCCAAAATAAGAACTAAGAACCTTGCATTGGAGATGCTCTTATACACTGGTAGCTGAA TCACATGTTTCTAGGACAAGCACAAGCTGATTATAGTATTGAATTTTGGGTTGAAGTGCAATAAGAATTCTTGGAAAAAA TTGTCTTGGCTAGCTCTAGTCATCACTAGGCCGGTGCCTCATAGCCAACAGCTCCGAATTCACCTATAAGTAGCTGATAC AAACACTAGCTGCCAATTGCCACTCGAAATTAATCAACTTTGCAATTATGGCTTGGGTATTTCCCCATTAAATATTGTGT TTCTTATTAATTATGGATATAACAGGAGAATGTTGAGGAAGAAAGTAAAGTCATAGTTGCTGTGAGGCAAGGCAACATCA TGGGGACTGCTTTTCATCCTGAATTGACTGCTGATACTCGGTGGTATATATAAGTTGATTTTGACTTTTGAATTTTACAG TTATATGGTATGATATGAAGTTCAAAAGATTTGTTTTTGCAGGCACAGTTATTTCTTAAAGATGGCAAATGTAAGTGGAG AAGAGGCCTCAAGTAGTCTTGTTCCAGCAGAAGCCAGTACGAATGTGAACCAGCGGCCACTTAATGACCTTCCTATCTTT CAATCCTGAATTGACTGCTGATACTCGGTGGTATATATAAGTTGATTTTGACTTTTGAATTTTACAGTTATATGGTATGA TATGAAGTTCAAAAGATTTGTTTTTACAGGCACAGTTATTTCTTAAAGATGGCAAATGTAAGTGGAGAAGAGGCCTCAAG TAATCTTGTTCCAGCAGAAGCCAGTACGAATGTGAACCAGCGGCCACTTAATGACCTTCCTATCTTTCAATAGGACCAGC CATTCATCAAGACTAAAACAATTATGGATGATTTTTTAATTAGTATAATTTATTTTGAAAACAATATCTCATAATTTCTG TGAGATCATAGAAGAAAGCTTAATAGTATTTTTATAAAAGATAATGTGTTTTAGACTTTGGTGTTTTGTGTAGTTTTCTA TCTACTTGTAGCCTGTACTTTGGAAGGCGTTAAAATATATTCATTCTTGCATGGAAAATGCTCGCATCACTTTCTTTGAC ACTCTGTATTGGTCATAACCCATGTAGGATCTACTAAATTATGAGTCACTTTTAATCAGGTAGGACCTACATAAATTTTA ACCAATTAAAAAGAGTGTTAGAAATAGGCCCAGTTTGGAAGAGCTTATTTGAGCTTATCTGACAGCATAAGCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0210000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAAGCTTGCTGAGTACCACAACTTGTTTCCCGCCTTGCGAGAGTTTGTGCAATTGGGAAAGCCTGTTTGGGGAAC CTGTGCAGGGCTAATATTCTTGGCAAATAAAGCTGCAGGACAGAAGATTGGTGGTCAAGAACTGGTTGGTGGCCTTGACT GTACTGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGACAGAGCTTTCAGTTCCAGAGCTTGCATCCAAG GAAGGTGGCCCCGAAACGTTTCGTGGAATTTTTATTCGCGCCCCAGCAATTATTGAAGCTGGGCCAGATGTTCAAGTGCT GGCTGACTATCCTGTACGTTCTAACAGATTGTCCACTGCTGATTCCCCTACTGAAGACAAAAAGGAGAATGTTGAGGAAG AAAGTAAAGTCATAGTTGCTGTGAGGCAAGGCAACATCATGGGGACTGCTTTTCATCCTGAATTGACTGCTGATACTCGG TGGCACAGTTATTTCTTAAAGATGGCAAATGTAAGTGGAGAAGAGGCCTCAAGTAGTCTTGTTCCAGCAGAAGCCAGTAC GAATGTGAACCAGCGGCCACTTAATGACCTTCCTATCTTTCAATCCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0210000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKLAEYHNLFPALREFVQLGKPVWGTCAGLIFLANKAAGQKIGGQELVGGLDCTVHRNFFGSQIQSFETELSVPELASK EGGPETFRGIFIRAPAIIEAGPDVQVLADYPVRSNRLSTADSPTEDKKENVEEESKVIVAVRQGNIMGTAFHPELTADTR WHSYFLKMANVSGEEASSSLVPAEASTNVNQRPLNDLPIFQS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31559:SF1
1 200 200 3.9E-86 –
ProSiteProfiles
PS51130
1 170 170 46.932
IPR002161
PIRSF
PIRSF005639
1 172 172 1.8E-52
IPR002161
PANTHER
PTHR31559
1 200 200 3.9E-86
IPR002161
Pfam
PF01174
1 168 168 2.7E-30
IPR002161
Gene3D
G3DSA:3.40.50.880
1 178 178 2.3E-55
IPR029062
SUPERFAMILY
SSF52317
6 168 163 5.92E-33
IPR029062

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004359
Molecular function Glutaminase activity Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3.
Subterm of
GO:0042819
Biological process Vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Subterm of
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0210000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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