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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0000719 |
| Transcript ID | Lj0g3v0000719.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 532 | 532 | – | – | |
| PANTHER | 41 | 430 | 390 | 2.00E-142 | – | |
| ProSiteProfiles | 49 | 83 | 35 | 10.063 | ||
| Pfam | 51 | 81 | 31 | 0.0083 | ||
| TIGRFAM | 52 | 85 | 34 | 1.20E-04 | ||
| Pfam | 83 | 132 | 50 | 2.20E-13 | ||
| ProSiteProfiles | 84 | 118 | 35 | 11.729 | ||
| TIGRFAM | 87 | 120 | 34 | 2.00E-09 | ||
| ProSiteProfiles | 119 | 152 | 34 | 8.133 | ||
| ProSiteProfiles | 153 | 187 | 35 | 11.06 | ||
| Gene3D | 154 | 275 | 122 | 3.00E-04 | ||
| Pfam | 156 | 185 | 30 | 0.0056 | ||
| TIGRFAM | 156 | 188 | 33 | 2.60E-05 | ||
| Pfam | 187 | 235 | 49 | 4.90E-14 | ||
| ProSiteProfiles | 188 | 222 | 35 | 11.63 | ||
| TIGRFAM | 190 | 223 | 34 | 3.70E-06 | ||
| ProSiteProfiles | 223 | 257 | 35 | 11.762 | ||
| TIGRFAM | 225 | 258 | 34 | 1.90E-06 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.279 | ||
| Pfam | 260 | 290 | 31 | 7.50E-05 | ||
| TIGRFAM | 261 | 293 | 33 | 4.40E-07 | ||
| Pfam | 300 | 349 | 50 | 5.80E-13 | ||
| ProSiteProfiles | 301 | 335 | 35 | 12.134 | ||
| TIGRFAM | 303 | 337 | 35 | 2.70E-08 | ||
| ProSiteProfiles | 336 | 366 | 31 | 8.901 | ||
| ProSiteProfiles | 384 | 418 | 35 | 10.819 | ||
| Pfam | 384 | 431 | 48 | 3.90E-09 | ||
| Gene3D | 387 | 420 | 34 | 3.00E-04 | ||
| ProSiteProfiles | 419 | 453 | 35 | 6.029 | ||
| ProSiteProfiles | 471 | 505 | 35 | 5.831 | ||
| Gene3D | 472 | 557 | 86 | 3.00E-04 | ||
| PANTHER | 483 | 533 | 51 | 2.00E-142 | – | |
| Pfam | 502 | 534 | 33 | 1.20E-06 | ||
| ProSiteProfiles | 506 | 540 | 35 | 11.257 | ||
| TIGRFAM | 509 | 540 | 32 | 4.80E-05 | ||
| Phobius | 533 | 553 | 21 | – | – | |
| PANTHER | 552 | 583 | 32 | 2.00E-142 | – | |
| Phobius | 554 | 645 | 92 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0000719.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0000719.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.