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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0048379 |
| Transcript ID | Lj0g3v0048379.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 10 | 539 | 530 | 6.40E-263 | – | |
| PANTHER | 10 | 539 | 530 | 6.40E-263 | – | |
| Phobius | 12 | 29 | 18 | – | – | |
| Phobius | 30 | 48 | 19 | – | – | |
| SUPERFAMILY | 34 | 105 | 72 | 4.93E-09 | ||
| Gene3D | 35 | 304 | 270 | 1.60E-07 | ||
| Phobius | 49 | 66 | 18 | – | – | |
| Pfam | 53 | 102 | 50 | 5.20E-08 | ||
| ProSiteProfiles | 54 | 88 | 35 | 8.254 | ||
| Phobius | 67 | 86 | 20 | – | – | |
| Phobius | 87 | 114 | 28 | – | – | |
| ProSiteProfiles | 89 | 123 | 35 | 9.778 | ||
| TIGRFAM | 92 | 125 | 34 | 3.30E-05 | ||
| Phobius | 115 | 541 | 427 | – | – | |
| Pfam | 123 | 172 | 50 | 2.90E-12 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.457 | ||
| TIGRFAM | 126 | 159 | 34 | 4.80E-05 | ||
| ProSiteProfiles | 159 | 189 | 31 | 8.857 | ||
| TIGRFAM | 161 | 185 | 25 | 1.30E-04 | ||
| Pfam | 190 | 238 | 49 | 8.80E-18 | ||
| ProSiteProfiles | 191 | 225 | 35 | 11.718 | ||
| TIGRFAM | 193 | 227 | 35 | 1.90E-08 | ||
| SUPERFAMILY | 208 | 464 | 257 | 4.93E-09 | ||
| ProSiteProfiles | 226 | 260 | 35 | 9.756 | ||
| TIGRFAM | 228 | 255 | 28 | 1.10E-04 | ||
| ProSiteProfiles | 261 | 295 | 35 | 12.945 | ||
| Pfam | 261 | 288 | 28 | 1.80E-08 | ||
| TIGRFAM | 263 | 297 | 35 | 3.80E-10 | ||
| Pfam | 295 | 344 | 50 | 1.50E-17 | ||
| ProSiteProfiles | 296 | 330 | 35 | 12.211 | ||
| TIGRFAM | 298 | 332 | 35 | 4.50E-10 | ||
| ProSiteProfiles | 331 | 365 | 35 | 11.542 | ||
| TIGRFAM | 334 | 366 | 33 | 1.30E-09 | ||
| Pfam | 366 | 414 | 49 | 1.70E-17 | ||
| ProSiteProfiles | 366 | 400 | 35 | 13.471 | ||
| TIGRFAM | 368 | 402 | 35 | 4.40E-11 | ||
| Gene3D | 399 | 430 | 32 | 1.60E-07 | ||
| ProSiteProfiles | 401 | 435 | 35 | 11.762 | ||
| TIGRFAM | 403 | 437 | 35 | 1.50E-07 | ||
| Pfam | 432 | 461 | 30 | 1.50E-13 | ||
| ProSiteProfiles | 436 | 470 | 35 | 11.762 | ||
| TIGRFAM | 438 | 468 | 31 | 1.90E-05 | ||
| ProSiteProfiles | 471 | 505 | 35 | 12.068 | ||
| Pfam | 472 | 517 | 46 | 5.50E-13 | ||
| TIGRFAM | 474 | 506 | 33 | 2.20E-07 | ||
| ProSiteProfiles | 506 | 540 | 35 | 10.128 | ||
| TIGRFAM | 508 | 539 | 32 | 4.50E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0048379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0048379.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.